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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTACAATCCCGCAACCGGTGAAGTTCTAGCTAATGTCGCGTGCATGGGTAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatttttttgcccatctactgtgtttatgtgatctcctagaagaaaaatatcttgtgcatttagcatattttattgaacttgccaattgaacct...

Basic information

species Vitis vinifera
transcript Vv19s0085g00860.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862425|gb|DT011480.1|DT011480
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATG
EST: gi|71856037|gb|DT005092.1|DT005092
EST:     AAGAAGGAAGGCCAATGATGCGAAAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACTGAAAAGGAGCAAACTT
genomic: AAGAAGGA-GGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAA-GGAGTAAACTT
EST: gi|71861490|gb|DT010545.1|DT010545
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTA
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTA
EST: gi|71860172|gb|DT009227.1|DT009227
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATG
EST: gi|161705553|gb|FC054834.1|FC054834
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACTGAAAGGAGCAAACTTATGAGGAAATG
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATG
EST: gi|71862210|gb|DT011265.1|DT011265
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATG
EST: gi|71861253|gb|DT010308.1|DT010308
EST:     TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTT                         CTTGGAGCAAACTTACTACTACCGAAAGGAGCAAACTTATGAGGAAATG
genomic: TAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatt ... atttcttcagCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTACAATCCCGCAACCGGTGAAGTTCTAGCTAATGTCGCGTGCATGGGTAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTgtaagggatttttttgcccatctactgtgtttatgtgatctcctagaagaaaaatatcttgtgcatttagcatattttattgaacttgccaattgaacct

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa