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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATTAGgtttcttatctctgattttatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

Basic information

species Vitis vinifera
transcript Vv19s0027g01470.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 3
-----------------------------------------------ATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATTAGgtttcttatctctgattttatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag
                                               ||||||||||||| ||||| ||||||||||||||||| |||   || ||| ||||   |        || | |      ||  ||    |  ||    | | || ||| ||| ||  || ||   |            
AGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGGATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGgtaaatgtaacgccatatcacttgaaatatttccaaagaaaggtttgtgttgatgatttttt--gtacatgcag-----------

upper sequence: Vv19s0027g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 3
-----------------------------------------------ATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATTAGgt---ttcttatctctgattttatcaatgattgttttctatta-acaagttt--cttaatgttttcttcagttcaat---aacttatcatgcag------
                                               ||||||| ||||| ||||||||||||||||||||||| ||||| || ||| ||||   ||  | | ||    || |   | | |  |||||  ||| || | |    ||     ||  | |   ||  |    ||   ||  | ||       
AGCTGAGCTGCTAAGGCATGGACATACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtaactttatttttccatgttcacttaaggtctttttcgtttacaccaatccagctctggattagcatagattagaattaaatccatgttacaatccatg

upper sequence: Vv19s0027g01470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 3
-----------------------------------------------ATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATTAGgtttcttatctctgattttatcaatgattgttttctattaacaagtttcttaatgttttcttcagttca-ataacttatcatgcag
                                               ||||||| ||||| ||||||||||||||||||||||| ||||| || ||| ||||   ||   | ||   |  ||| | |   |||  || | |   |||| ||   ||  |||| |   ||  ||             
AGCTGAGCTGCTAAGGGATGGACGTACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtacttttgttttgccgtactcacttaaattttcttaatga--ggtttgttttggtaatctttaacacatgtag------------