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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

Basic information

species Vitis vinifera
transcript Vv19s0027g01380.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 3
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag
|||||||||| | |||   |||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| | |   || ||| ||||   |        || | |      ||  ||    |  ||    | | || ||| ||| ||  || ||   |            
AGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGGATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGgtaaatgtaacgccatatcacttgaaatatttccaaagaaaggtttgtgttgatgatttttt--gtacatgcag-----------

upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 3
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaat---gattgttttctatta-acaagttt--cttaatgttttcttcagttcaat---aacttatcatgcag------
||| |||||| | |||   ||||| || || || ||||| |||||||||||||| ||||| ||||||||||||||||||||||| | ||| || ||| ||||  |||   | |    || ||| |   | |  |||||  ||| || | |    ||     ||  | |   ||  |    ||   ||  | ||       
AGCTGAGCTGCTAAGGCATGGACATACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtaactttatttttccatgttcacttaaggtctttttcgtttacaccaatccagctctggattagcatagattagaattaaatccatgttacaatccatg

upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 3
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttca-ataacttatcatgcag
||| |||||| | |||   ||||  || || || ||||| |||||||||||||| ||||| ||||||||||||||||||||||| | ||| || ||| ||||   ||   | ||   |  ||| | |   |||  || | |   |||| ||   ||  |||| |   ||  ||             
AGCTGAGCTGCTAAGGGATGGACGTACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtacttttgttttgccgtactcacttaaattttcttaatga--ggtttgttttggtaatctttaacacatgtag------------

upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag
 |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| || | ||| || ||| | || | |   | || ||    | | || || |  |||| ||| || |  ||| || |  | ||   ||   ||  || |       
GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtc-cccat-atgcagtaactggtt-taatctaataataattaactttatataattttatcttttttattttgtag-----

upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag
 |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || | ||| || ||| | || | |   | || ||    | | ||  | |  |||| ||| |     ||| || |  | |    ||       |||| ||| ||
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtc-cccat-atgcagtaactggct-taatctaataatagtcaactttatataatttcatcttt-----tttattatgtag