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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATATTGGTGATTCAAGAGCAGTACTGGCAACAAGAGACGTAGAGAACTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctctctctctaccttatttatacatcttttttgttttttatgggctcagttggaaaaaatgatcagcaatactacttgtcttattgttatggagcttaaagtcctgcttcttatcatag

Basic information

species Vitis vinifera
transcript Vv19s0015g01920.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349812064|gb|FQ410861.1|FQ410861
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349816839|gb|FQ399707.1|FQ399707
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|161715695|gb|FC067799.1|FC067799
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCC
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCC
EST: gi|349808493|gb|FQ405637.1|FQ405637
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349823148|gb|FQ400127.1|FQ400127
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349819638|gb|FQ413522.1|FQ413522
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349813219|gb|FQ411459.1|FQ411459
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349810260|gb|FQ401706.1|FQ401706
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
EST: gi|349819685|gb|FQ402622.1|FQ402622
EST:     CTCCTTGACAGCGATACAACTAACCATAGACTTGAAACCCAATCTGCCAA                         GGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG
genomic: CTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAgtatttctct ... cttatcatagGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGG