1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATACATTACCTTGCGACTTGGACTGAGACTCTCTGCTCTCTTTGGCCTTGGTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagcacttaattttctcttttattactgttattttgcattagaagtttttattagtgttaaacacattttttttcaattttttccttgtag
species | Vitis vinifera |
transcript | Vv19s0015g01340.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAG GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGEST: gi|110387855|gb|EC952553.1|EC952553
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
EST: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAG GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACGEST: gi|110730089|gb|EE106773.1|EE106773
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
EST: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAAAA GAGCCAGCATCCTGA-TATGCTCAGCCAAGAEST: gi|27582559|gb|CB005254.1|CB005254
genomic: GTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATC-TGAATATGCTCAGCCAAGA
EST: GGTTAAAAGTGGTTTAGAG GAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
genomic: GGTTAAAAGTGGTTTAGAGgtaggcagca ... ttccttgtagGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCGTCTCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACATTACCTTGCGACTTGGACTGAGACTCTCTGCTCTCTTTGGCCTTGGTGCTGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGgtaggcagcacttaattttctcttttattactgttattttgcattagaagtttttattagtgttaaacacattttttttcaattttttccttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA