Sequence
atgc intronic sequence ATGC exonic sequenceAGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgtgtctga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 3
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagc-tggcaatcaactctctctattttattctctatgcaagtgacaagt---tgtaaattggttgacacctgactc-cttaacaggattagcgtgtgtctga
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AGGAACCTGGTGAATTTGGTTGGCTATTGCGCTGAAAAAGGGCAGCATATGCTATTATATGCATTCATGCCTAATGGAAGCCTTGCATCGCACTTATATGgtattcattatctccatatgatagcatgctatactttcttgaaagaacctgtgccctcagttttttttttttttggctttcttaatatcctttttatg-gtttag
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 4
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgtgtctga-
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AGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAgtaagttagccatctatcttttttggtttacaaacttt-taagtcctaaaaattcttccttgtgccactcgtaccacttggggaaacacaatgggttggat
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G36140.1 (Glycine max), 5'ss of exon 4
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgt-gtctga-
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AGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAAGGACAACACATGCTTGTATATGTCTACATGAGTAAAGGGAGCTTGGCTTCCCACTTGTATAgtaagttagctatctatcttttgtttcatattat-tgtgcaattttttttgggtga-ttccttgcaagttcaatatgaaatagtatttgaatcccaccttat
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 4
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactcc--ttaacaggattagcgtgtgtctga-
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AGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatcaa-tctttttgcatgacatgc-ata-gactgttcttctgtagaaacttttgcccctgattgtgtttatgcaaatatgcatctataagca
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 3
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatc-aactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgtgtctga-----
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AGGAATCTGGTGAATTTGGTTGGATATAGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatctatctttttccatgagatgc---ata-gactgttcttctgtacaaacttttgcccctgaatctgctcctgca--aacatgtatctatacgca
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 3
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctct---ctattttattctctatgcaagtga-caagttgtaaatt---ggttga--cacctgactccttaacaggattagcgtgtgtctga------------------------------------------------------------------------
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CGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAGGCCAACACATGCTTATATATGTTTACATGAGTAAAGGAAGCTTAGCTTCTCATTTATACAgtaagtaactacctggttatacataccatattaatctgcttgtcactaaatgaactgttaatgcaatgttgagctattcggtatctttgtagaacatttattgagttgatggtttagacttcactaaatgatgagccttggtaaagatttgagatgcactaaaatggtacttttgatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713605|gb|FC063415.1|FC063415EST: GCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATG ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAG
genomic: GCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggc ... gaacatgcagATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatcaactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgtgtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagga