Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGgtgagagcgtaaatttgaacttaattaatcatgatttgttcttcatattaagatttcatgcatgaactctatgatcaaactagccaaaatgcttccatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G35650.1 (Glycine max), 5'ss of exon 5
GTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGgtgagag----cgtaaatttgaactt---aattaatcatgatttgttcttcatattaag-atttcatgcatgaactctatgatcaaactagccaaaatgcttccatca------------------------------------------------------------------------------------
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GTTGCATTTCTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTGAAGCAACGCATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGgtataatgctttgttctttttccttttccaaatattttcactccatcttttattttatgcaatccatatatacatattgagattttatttccttcttctcttttgatataatatatcacctttggaacttccaaaagcacaccatgatcatgattattgagatagtgggtatatatttttttactctctcag
upper sequence: Vv19s0014g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G34770.1 (Glycine max), 5'ss of exon 4
GTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGgtgagagcgtaaatttgaacttaattaatcatgatttgttcttcatattaagatttcatgcatgaactctatgatcaaactagccaaaatgcttccatca
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GTTGCATTCCTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTGAAGCAACGCATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGgtataatgctttgttctttttcctttttcaaatattttctcttccatcttttttttttttcattttcttttctatcggactcaaacttattctcttatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30129365|gb|CB914704.1|CB914704EST: GCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACG CTCATCAAGAGGCATT
genomic: GCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGgtgagagcgt ... aaaattgcagCTCATCAAGAGGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCATTTCTCGATCATCAACGATTGATTCTCAACGTGGACAATAGCGCGCTTAAGCAAAGGATCGCGGCGTTAGCTCAAGATAAGATTTTCAAAGACGgtgagagcgtaaatttgaacttaattaatcatgatttgttcttcatattaagatttcatgcatgaactctatgatcaaactagccaaaatgcttccatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
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