Sequence
atgc intronic sequence ATGC exonic sequenceGATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g14670.1 (Oryza sativa), 5'ss of exon 3
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggtt-----cagttctctgttacatgagcctgcagtc-atgcagatcatttctcttgaaactgcc---------
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GATTCGGAACTGTCTGGTTCAGCTTTATTCAAAGGATATCACTCCAGATGACAAGCAAGAGCTTGATGAGGCTCTCCAGAGAGAGgtacttgttgcaaacattatgttcatttacaaaatgctttgcattattttcagcatgaggtcagaaagatccataatccattcttat-gcttcacctgacatcctattattttag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 3
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaa-atatttgtatgacatggctcaacatagacatgttcttggttcagttctct--gttacatgagcctgc------agtcatgcagatcat---ttctcttgaaactgcc----------------------------------------------------------------------------------
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GATAAGGAATTGTTTGGTTCAACTATACTCAAAGGATATCACACCAGATGATAAACAGGAGCTTGATGAGGCTCTCCAGAGGGAGgtaagataatcaagtta-atcact-gactcatttatagtcttgattttttttttcaaattgtatgtgccttttcgattatttatagaaattataaattactttcagcatgatgctcaacatgccagattttgtgctccaactaaatttattaatgcattaataaggtgaatcagaacatgttcttatttttcag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 5
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctg-ttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc---------------------------------------
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GATAAGAAGTTGTTTAACAAAACTTTATGCAAAAGACATAACTCCAGATGAGAAGCAGGAACTCGATGAAGCACTTAAGAGAGAGgtgatttcctttttgtaggagcttggattatgagtggcacaagaccactatagtgattatttcaacaatcagcaagatttgtcatacatcaaaaatatatttatatgattctaattccttatattttttcttatgttcag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G473001_T01 (Zea mays), 5'ss of exon 3
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctgttacatgagcctgcagtcatg--cagatcatttctcttgaaactgcc----
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GATACGCAACTGTTTGGTTCAACTCTACTCAAAAGATATCACTCCGGATGATAAGCAGGAACTTGATGAGGCTCTGCAAAGAGAGgtacttctttcaatctaattttattacctaaaattctttgaagcttgagaccaaagagattaattcttaatttcttacctgaatacctctctctttctttttcaag
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 3
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttct--ctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc
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GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGgtgaatatcaaaagggcttttgttta-atagaatttctttttattctttttttgctagtgttttttcttgagttcatatcaaaagcaatatattaaattgt-
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 4
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctgttacatgagcctgcagtcatg-cagatcatttctcttgaaactgcc--
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GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGACGAGGCTCTACAGAGGGAGgtgaatatcaaaagggctttgtttaatat---cattttttctcctttttttgctagtgttctttcttgtgttcataacaaaagccatatattaaatcggaagt
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 3
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggtt-----cagttctctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc
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GATAAGGAATTGTTTATCTCAATTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAGgtgattatcaaaacctttaggatttagtttgatgttttgccaaactgcaacaagtaaccattactttttttttttttttatcacatcaatgcctttgctt-----
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 4
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggtt----cagttctctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc
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GATAAGGAATTGTTTATCTCAATTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAGgtgagtgtcaaaacctttaggattagtttgatgttttgccaaactgcaacaagtaaccattactttttttttca-tcacatcaatgccttcgtttggagtt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352763749|gb|FQ473452.1|FQ473452EST: AGCAGGAACTTGATGAGGCTCTACAGAGAGAG ATTCAAGCAGCATTTCGCACAGATGAGATCCGGAGGACCCCTCCTACTCCA
genomic: AGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatattt ... tttcctgcagATTCAAGCAGCATTTCGCACAGATGAGATCCGGAGGACCCCTCCTACTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCCGGAACTGTTTAGCCCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGAGAGgtaaatatttgtatgacatggctcaacatagacatgttcttggttcagttctctgttacatgagcctgcagtcatgcagatcatttctcttgaaactgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataga