1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTATAACATTGGAACAGGGCTGGTCATTGCTCGTAGAGAAGATGGATCTTGGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagttctcctcgtggaactttgattcctcagcttctaggatattttggccacatatttcttgcttcacacatgagcttttcttggtgcatattat...
species | Vitis vinifera |
transcript | Vv19s0014g00860.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAG GCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCTEST: gi|110398966|gb|EC965450.1|EC965450
genomic: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagtt ... atttaaacagGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCT
EST: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAG GCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCTEST: gi|161713095|gb|FC064282.1|FC064282
genomic: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagtt ... atttaaacagGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCT
EST: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAG GCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCTEST: gi|110711044|gb|EE087789.1|EE087789
genomic: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagtt ... atttaaacagGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAAACAATGCT
EST: GGCCTCCCCCGTCTGCCATTTCCTCCTTTGGGATTGGGTGGGGAGCTCAG GCTGGAGGAGAATTA-CACACCTCCTAATCGTGGTAAAAACAA
genomic: GGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagtt ... atttaaacagGCTGGAGGAGAATTAACAGACTTCATAATCGTGTTAAGAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATAACATTGGAACAGGGCTGGTCATTGCTCGTAGAGAAGATGGATCTTGGTCTCCCCCGTCTGCCATTTCTTCCTTTGGTATTGGTTGGGGAGCTCAGgtaaatagttctcctcgtggaactttgattcctcagcttctaggatattttggccacatatttcttgcttcacacatgagcttttcttggtgcatattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA