Sequence
atgc intronic sequence ATGC exonic sequenceAAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaactgtgtcctttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G33840.1 (Glycine max), 5'ss of exon 3
AAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaactgtgtcctttcccagttttctccatgtacacatcccat-ataactaagtttctcacaattgcttgccat-ttgtacag---
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ACAGTCGTTGATACTACTGGTGCCGGTGATACTTTTACTGCTGCTTTTGCTGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatggcagaatgaaattc--gttttctttatagagttttctctttggaaattggaaaattgtgtctgactactatgttctgcaacag
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G38510.1 (Glycine max), 5'ss of exon 3
AAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaactgtgtcctttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacag
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ACAGTTGTCGATACAACTGGTGCTGGTGATACTTTTACTGCTGCTTTTGCTGTGGCCTTGGTTGAGGGAAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatggtggaatgcaactcttttttctttctagaattttctctttggaaaaatgttcct---aactacgttgttctgcaacag
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G33850.1 (Glycine max), 5'ss of exon 3
AAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaactgtgtcctttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacag
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ACAGTTGTTGATACAACTGGTGCTGGTGATACTTTTACTGCTGCTTTTGCCGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCCGgtgtgtatggtggaatgcaattc---ttttttctttctagacatttctctttggaaaaatgttcctaactatgatgttctgcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689106|gb|EC932578.1|EC932578EST: TGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTG CTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGC
genomic: TGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaa ... atttgtacagCTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGTTCTCGATACCACCGGAGCAGGCGATACCTTTACTGCTGCATTTGCTGTGGCTTTTGTGGAGGGCAGGTCTAAAAAGGAATGCTTGAGGTTTGCTGgtaagattaactgtgtcctttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA