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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCAATGAAGTCTTATCGACTATCAGAGCTCTCTCAGGCTGAAGTCAACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGgtgggcttcaagtttctttctgaaagcaactttcacttccctttgaggtttattcaatttacttagcgcttgatgatactgtatcag

Basic information

species Vitis vinifera
transcript Vv18s0166g00300.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014573|gb|FQ437575.1|FQ437575
EST:     ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTG                         GTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
genomic: ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGgtgggcttca ... actgtatcagGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
EST: gi|351043930|gb|FQ431361.1|FQ431361
EST:     ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTG                         GTTCACCCCATTGTCGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
genomic: ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGgtgggcttca ... actgtatcagGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
EST: gi|349825486|gb|FQ419403.1|FQ419403
EST:     ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTG                         GTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
genomic: ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGgtgggcttca ... actgtatcagGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
EST: gi|351028553|gb|FQ444834.1|FQ444834
EST:     ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTG                         GTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA
genomic: ACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGgtgggcttca ... actgtatcagGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAA