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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaatttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat...

Basic information

species Vitis vinifera
transcript Vv18s0122g00090.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 3
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaat-ttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
||| || || ||||| ||||||||||||||||| ||||||||    ||||||||||| ||||||||| |||||||  ||||||||||||| ||||||||||| |||||    |||| || ||  |    |    |  | || ||||      ||  |   ||| ||   |   |  || ||   | ||||| |   | |  
TATTGGTGTCGGTGTTTGCACTGTAACTGATGTAAAAGTTAACCTCAAAGGTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtattatttaatgtttcttctccaatttgctggtgatataaaattgattgctatttctgttgtggtttccttttcacctgtcattttatatattat-

upper sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 3
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaat-ttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
||| || || ||||| ||||||||||||||||| ||||||||    ||||||||||| ||||||||| |||||||  ||||||||||||| ||||||||||| |||||    |||| || ||  |    |    |  | || ||||      ||  |   ||| ||   |   |  |  ||   | ||||| |   |    
TATTGGTGTCGGTGTTTGCACTGTAACTGATGTAAAAGTTAACCTCAAAGGTTTCATGTGTGCCTGTATAGCAGTTTTGTCAACATCTTTACAGCAAATTgtaagtattatttaatgtttcttctccaatatgctggtgatataaaattgattgctatttctgttgtggtttcctttacacctgtcattttatagatatt-

upper sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G76670.1 (Arabidopsis thaliana), 5'ss of exon 3
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgcta-atttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
||| || || ||  | || ||||| |||||||| ||||||||||| ||||||||||| ||||| ||    || ||  | || || ||| ||||||| ||||| |||||     | |    |||||  |||   ||   | || || |  |    |||    | ||   || | |  | |   ||  |      | |  | |
TATCGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTgtaagtattcatcacaccatctctttgtttatgttagatctggaatttcttagatcagtattcatcttttta-cattctttgaaacagaaaggctcaaact

upper sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G21070.1 (Arabidopsis thaliana), 5'ss of exon 3
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaatttcctcttgttttgcatttattatgtaaatagtcc--tgtcaaggctgatgaattgatcggt---ttacaaattattttttccctgaat
| ||||||| ||  | || ||||| |||||||| ||||||||||| ||||||||||| ||||| ||    || ||  | || || ||| | ||||| || || ||  | |    ||    |   || || ||||  ||   ||  | |     | ||     |  | |||| |  |||    |   | | | | |  |  |    
TGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCgtaagcttttttatatcatgttcagtgtt-cattccttccttattttgcttgatctctgattttgtcaattaagtggtaatctggcagtgactctgccttt----

upper sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G42420.1 (Arabidopsis thaliana), 5'ss of exon 3
TATAGGAGTGGGTGTCTGCACTGTAACTGATGTGAAAGTTAATGCTAAAGGTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatatgctaatttcctcttgttttgcatttattatgtaaatagtcctgtcaaggctgatgaattgatcggtttacaaattattttttccctgaat
| | || || ||| | || ||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||  |  | ||  |||| |||||||||||||| ||| | |     ||   |  || ||||  |||      |    | |    ||||  ||||| ||||| |  ||||     || | | || | |    
TGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAAAGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCAAATTgtaagtcttt-----ttgtttggtgatttggttttgaagcttgtggaat----tcaaatctgatcaattggt--gttttttccttctgtgttgcttag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890240|gb|DT039295.1|DT039295
EST:     GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATT                         TCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG
genomic: GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatat ... tgtgatacagTCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG
EST: gi|71885432|gb|DT034487.1|DT034487
EST:     GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATT                         TCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG
genomic: GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatat ... tgtgatacagTCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG
EST: gi|161711669|gb|FC058263.1|FC058263
EST:     GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATT                         TCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG
genomic: GTTTCATATGTGCCTGTGTAGCAGTAGTGTCAACATCTTTGCAGCAAATTgtgagtatat ... tgtgatacagTCAATAGGTTCTTTGCAAAAGAAGTACTCAATTGGATCTTTCGAATTGCTG