Sequence
atgc intronic sequence ATGC exonic sequenceACTCGGGCTCCAATATGTATTGATTTACAAAAGGATGGTTCCCTAAGCAGCAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAgttagtacttttaataaactccatgtaacctttgtcttcaggggcttagtgatttaacatggcttattttttcattgaaccttagtatgagaaaccttca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTCGGGCTCCAATATGTATTGATTTACAAAAGGATGGTTCCCTAAGCAGCAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAgttagta-----cttttaataaactccatgtaacctttgtct-tcaggggcttagtg-atttaacatggcttattttttcattgaaccttagtatgagaaaccttca--------------------------
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ACACGAGCTCCTATAATAATTGAATTGAGCAGGGAGAGTTCTTTGAGCAGCAAGGCAATTATCTTGCAAATCGACAATAAATCTCAACAAGTTTCTGCAAgtaagtctctatctatgaacatatgcaatttagcaatgctatgtgaggctctttctgcatttatgataaaaaaattt--cgatcagtcttctcataata--tctccattgtgttctacatgggtatattttag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTCGGGCTCCAATATGTATTGATTTACAAAAGGATGGTTCCCTAAGCAGCAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAgttagtacttttaataaactc-catgtaacctttgtcttcaggggcttagtgattta-acatggcttatttt-ttcattgaaccttagtatgagaaaccttca---------------------------
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ACACGGGCTCCTATTATCATTGATTTGAGTAGAGAAGAATCACTGAGCAGCAAGGCAATAATCTTGCAAATTGACAATAAAAATCAACAAGTTTCTGCAAgtaagagctccctatgtgcacatatgcaat-ttagcaatgatttgtgaagctatttctgcatgtaagatgcaatgcattagattaatatttgactaatatttccgtttttttcgaatgtgtgtattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185542|gb|CF604895.1|CF604895EST: CAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAA GTGCTCTTCGACATTCTCTCCAGG
genomic: CAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAgttagtactt ... cttattacagGTGCTCTTCGACATTCTCTCCAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTCGGGCTCCAATATGTATTGATTTACAAAAGGATGGTTCCCTAAGCAGCAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAgttagtacttttaataaactccatgtaacctttgtcttcaggggcttagtgatttaacatggcttattttttcattgaaccttagtatgagaaaccttca
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