Sequence
atgc intronic sequence ATGC exonic sequenceGGCAGAAGATGACGTGCGCTATATTAGCAGTTGCCATATTGCTGTAATTTCTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgtatgagtcttcttctattattgtatgtttttttttaactatatttgatatctatatatatatatatactatttgtttattgaataaactggttgtacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 5
GGCAGAAGATGACGTGCGCTATATTAGCAGTTGCCATATTGCTGTAATTTCTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgtatgagtcttcttctattattgtatgtttttttttaactatatttgatatctatatatatat-atatactatttgt---ttattgaataaactggttgtacct
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GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgta--atgcttctact-ttatcttctatttcagtttg-tggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt
upper sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G35990.1 (Glycine max), 5'ss of exon 5
GGCAGAAGATGACGTGCGCTATATTAGCAGTTGCCATATTGCTGTAATTTCTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgta-tgagtct------tcttctattattgtatgtttttttttaactatatttgatatctatatatatatatatactatttgtttattgaataaactggttgtacct
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GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAACCACCAAAACGgtaattcgtctactttatcttttatttcagtttgtgggcttggagagatttttgggcttcggaggtgaaaaatcatgtgtgaattttccagtaaaatatt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698378|gb|EE075812.1|EE075812EST: CTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACG ATCTCTCGTTTGTCAAGGAAAAATGTCTGTTTTGTTATGTTCATGGATGAA
genomic: CTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgtatgagtct ... ttcatttcagATCTCTCGTTTGTCAAGGAAAAATGTCTGTTTTGTTATGTTCATGGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAGAAGATGACGTGCGCTATATTAGCAGTTGCCATATTGCTGTAATTTCTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgtatgagtcttcttctattattgtatgtttttttttaactatatttgatatctatatatatatatatactatttgtttattgaataaactggttgtacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa