Sequence
atgc intronic sequence ATGC exonic sequenceGTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatattagatatagatagacacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g08170.1 (Oryza sativa), 5'ss of exon 3
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatattagatatagatagacacc-----
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CTCGACATTTATTCTTTGTCGAGGAAATGGAAGGAGTTAGTCGATAAGGCTCGAGCGAAGCAGCTACAGCCCCATGAATACAATTCTGgtactttctttgt-ccgtacacaaa-attaaat-gtgtagctcattga--tattcaattttctatatattatctgagatggttataaggaatcaactgttcttgg
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G036534_T01 (Zea mays), 5'ss of exon 3
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatct-atatattagata-tagatagacacc-
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CTTGACATTTATTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCGCGAGCAAAGCAGCTGCAGCCCCATGAGTACAACTCTGgtatt-tctttgcctcatacacaa--atctgaatatgcagcacattcttgcataccttttctaatactctgagtaagatgtggtcgatgctacatatttcttt
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 5
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatat-tagatatagatagacacc--
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CTTGACATTTATTCATTGTCAAGGAAATGGAAAGAGTTAGTTGATAAGGCGCGAGCAAAGCAGTTGCAGCCCCATGAGTACAACTCTGgtatt-tctttgcttcatacacaa--atctgaatacgcagcacattgttgtgtatcttttctaatgttttgaataagattgtatacttacagagattcactta
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 4
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatattaga---tatagatagacacc
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ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGgtatagtaattacatacttgtattttattgggtt-tctgttgtatattaatgaatgaattttccaatttaaaattgaatccttaaaaattgtaggtaggca--
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 4
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacat-cctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatattagatatagatagacacc-
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ATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGgtacagcaattacatacttgtattttattgggtttcttttgtatattaatgaatggattttccaat--ttaaaattgaatccttaaaaattgttggcaggca
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttg--tgcaataattgatggctcatatctatatattagatatagatagacacc-
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GTTGACATTTATTCGTTATCTAGAAAATGGAAAGAATTGGTTGATAAGGCTCGAGCCAAGCAGCTGCAGCCTCAGGAGTACAACACTGgtaatcctactac-tagaatattgaagtgatttgagtttgagtaatccttcaactagattgtttgagtcttgttgtttttatttcccttccgggtaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383970|gb|EC948379.1|EC948379EST: GGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAG GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACG
genomic: GGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcat ... tggtttgcagGTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCAAAGCAGCTGCAACCTCATGAATACAATACAGgtatcctcattacatcctacacactcattacatcatacaagatgtttccttgtgcaataattgatggctcatatctatatattagatatagatagacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa