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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAGAGCAAAAGAAACTGGATGTGCTTTCGAATGAAGTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACAgtaagtcattagataatttcttgaatgttttaactggaaacacactattccattcctaagagtttgaatcttctaccag

Basic information

species Vitis vinifera
transcript Vv18s0072g00770.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 4
GGTGAAGAGCAAAAGAAACTGGATGTGCTTTCGAATGAAGTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACAgtaagtcatt-agataatttcttgaatgttttaactggaaacacactattccattcctaagagtttgaatcttctaccag---------------------
|||||||| || |||||||||||||| ||||| ||||| ||||| ||||||||| |  ||||||||||||||||||| ||| ||| |  | ||||  |   | |||||| |  |||     | |    ||    | | || |  |  | |   |                      
GGTGAAGAACAGAAGAAACTGGATGTTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACAgtgagtgattcatgtgattttatttttattttaaata-aaatgtgttttagttttgactaaaattggttttatttcttatactttaagaataatgatttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38516542|gb|CF983717.1|CF983717
EST:     TGCTTTCGAATGAAGTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACA                         TGCATCCTTGTATCTGAAGAGGATGAGGAAGCAACAATTGTGGAGCCATCT
genomic: TGCTTTCGAATGAAGTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACAgtaagtcatt ... cttctaccagTGCATCCTTGTATCTGAAGAGGATGAAGAAGCAACAATTGTGGAGCCATCT
EST: gi|110361485|gb|EC924959.1|EC924959
EST:     GTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACA                         TGCATCCTTGTATCTGAAGAGGATGAGGAAGCAACAATTGTGGAGCCATCT
genomic: GTTTTTATCAAGGCTTTAGTAAGCAGTGGCCGAACAgtaagtcatt ... cttctaccagTGCATCCTTGTATCTGAAGAGGATGAAGAAGCAACAATTGTGGAGCCATCT