Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaacttttctggttaatttattcttgtttgcccttgttttattgaaggaaattttccttggaatttgatgtactatattgtcttttagaatcttt...

Basic information

species Vitis vinifera
transcript Vv18s0072g00340.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 3
CCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaacttttctggttaatttattcttgtttgcccttgttttattgaaggaaattttccttggaat-ttgatgtactatattgtcttttagaatcttt
|| ||||||||||||  |||| |   || ||| ||||| || ||||||||||| ||||| ||||| |||||||| || ||||| || || || |||||||||  ||| | || ||  ||   | |||   |||      | |  |  ||      || |   ||   || ||  | |   ||| |   |    | |   | 
CCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAgtgagaaccattactcttttgctaattgaagttgatgtatataatgctgtcaaccatgtgttttactatcttcttatttgataatcagtagcgggactgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184904|gb|CF604257.1|CF604257
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|37188563|gb|CF607912.1|CF607912
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110689732|gb|EE066215.1|EE066215
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71858057|gb|DT007112.1|DT007112
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161711203|gb|FC061170.1|FC061170
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349808701|gb|FQ406442.1|FQ406442
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110724158|gb|EE099751.1|EE099751
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161713530|gb|FC064065.1|FC064065
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71866368|gb|DT015423.1|DT015423
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349816394|gb|FQ403769.1|FQ403769
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71861520|gb|DT010575.1|DT010575
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161713678|gb|FC062818.1|FC062818
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351027003|gb|FQ439863.1|FQ439863
EST:     GAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: GAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71859744|gb|DT008799.1|DT008799
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|37189205|gb|CF608554.1|CF608554
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351019761|gb|FQ439578.1|FQ439578
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161706995|gb|FC055103.1|FC055103
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349816421|gb|FQ403796.1|FQ403796
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTCGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71861114|gb|DT010169.1|DT010169
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71869746|gb|DT018801.1|DT018801
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161705752|gb|FC056219.1|FC056219
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351054391|gb|FQ450474.1|FQ450474
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349820633|gb|FQ408462.1|FQ408462
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|33401635|gb|CF207262.1|CF207262
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349815187|gb|FQ400342.1|FQ400342
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161720179|gb|FC066762.1|FC066762
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71857178|gb|DT006233.1|DT006233
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110369430|gb|EC933590.1|EC933590
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161711519|gb|FC059497.1|FC059497
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110369977|gb|EC934151.1|EC934151
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71863182|gb|DT012237.1|DT012237
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110364936|gb|EC928554.1|EC928554
EST:     CTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110703573|gb|EE080535.1|EE080535
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349814772|gb|FQ409995.1|FQ409995
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349810453|gb|FQ401899.1|FQ401899
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351040455|gb|FQ434588.1|FQ434588
EST:     GAAAAACCTGGATCAA                         AGCTTCACAAGAAGGGGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: GAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110723960|gb|EE099371.1|EE099371
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|37183762|gb|CF603116.1|CF603116
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349811661|gb|FQ409658.1|FQ409658
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349825777|gb|FQ421876.1|FQ421876
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349821126|gb|FQ408713.1|FQ408713
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|37189213|gb|CF608562.1|CF608562
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|27584369|gb|CB007064.1|CB007064
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110689296|gb|EE065394.1|EE065394
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71858386|gb|DT007441.1|DT007441
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110430432|gb|EC996991.1|EC996991
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|30251603|gb|CB969336.1|CB969336
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAATACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|30251566|gb|CB969299.1|CB969299
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAATACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110689958|gb|EE066637.1|EE066637
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71874098|gb|DT023153.1|DT023153
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71857285|gb|DT006340.1|DT006340
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349807527|gb|FQ401942.1|FQ401942
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|33401621|gb|CF207248.1|CF207248
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110685399|gb|EE062095.1|EE062095
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71860368|gb|DT009423.1|DT009423
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351054990|gb|FQ440329.1|FQ440329
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTCGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349823297|gb|FQ400276.1|FQ400276
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349816778|gb|FQ399646.1|FQ399646
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|110703349|gb|EE080115.1|EE080115
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161712586|gb|FC062188.1|FC062188
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|34549858|gb|CF518090.1|CF518090
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71865250|gb|DT014305.1|DT014305
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161717004|gb|FC064668.1|FC064668
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161708059|gb|FC056108.1|FC056108
EST:     CAAA-CTGGGATGACCCCCATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCCCAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161721156|gb|FC070392.1|FC070392
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161705430|gb|FC057049.1|FC057049
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|30130215|gb|CB915554.1|CB915554
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|351032116|gb|FQ460373.1|FQ460373
EST:     GAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: GAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71863735|gb|DT012790.1|DT012790
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|71865086|gb|DT014141.1|DT014141
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTATTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349811855|gb|FQ410652.1|FQ410652
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|349819812|gb|FQ404558.1|FQ404558
EST:     CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161712761|gb|FC061985.1|FC061985
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161717780|gb|FC064729.1|FC064729
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
EST: gi|161715254|gb|FC064872.1|FC064872
EST:     CAAAACTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAA                         AGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC
genomic: CAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaact ... tattctacagAGCTTCACAAGAAGGAGACATGTGAAGCTGTTACAATTGTTGAGACTCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAAACCTGGATCAAgtatgaaacttttctggttaatttattcttgtttgcccttgttttattgaaggaaattttccttggaatttgatgtactatattgtcttttagaatcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat