1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAACAGAAGATAATGTTTGCCCTCACGTCAATCAAGGGTATTGGGAGGCGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgccttttcttttattctaagccctctgtttgatttcacggaaaatatgggaaaggaaggatttggaattttagttaatgcacttcttaatgcta...
species | Vitis vinifera |
transcript | Vv18s0072g00060.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110732426|gb|EE107700.1|EE107700
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110387218|gb|EC951868.1|EC951868
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110371313|gb|EC935234.1|EC935234
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110730467|gb|EE107583.1|EE107583
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110391677|gb|EC956670.1|EC956670
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|351016436|gb|FQ423863.1|FQ423863
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|77579580|gb|DV218639.1|DV218639
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|71872730|gb|DT021785.1|DT021785
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110419379|gb|EC985599.1|EC985599
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110689883|gb|EE066499.1|EE066499
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110700974|gb|EE078100.1|EE078100
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110420043|gb|EC986304.1|EC986304
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGCEST: gi|110360370|gb|EC923419.1|EC923419
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
EST: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAG GGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
genomic: CGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgcct ... atgctctcagGGCTGGTGAATTATCTGCTGCTGAGCTGGAGAACCTCATGGTTATTGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAACAGAAGATAATGTTTGCCCTCACGTCAATCAAGGGTATTGGGAGGCGATTCGCTAATATTGTTTGCAAGAAGGCCGATGTTGACATGAACAAAAGgtctctgccttttcttttattctaagccctctgtttgatttcacggaaaatatgggaaaggaaggatttggaattttagttaatgcacttcttaatgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaag