Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGTTGAAGCTTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGCGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttttacttaccatttgccgtagatttgaaaggcattccttagcttacagcatgcaaatgaatattgaagagttcgtgaattgaaataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcag

Basic information

species Vitis vinifera
transcript Vv18s0041g02060.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0041g02060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G35410.1 (Glycine max), 5'ss of exon 3
GAACAAGTTGAAGCTTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGCGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttttacttaccatttgccgtagatttgaaaggcattccttagcttacagcatgcaaatgaatattgaagagttcgtgaattga-aataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcag
|| ||| ||||||| |||||||| ||||| |||||||||||||| ||||| ||||| || || |||||||||   |||   || ||||||||| |  | ||||| |     ||||      || | |     || |    | |  ||   ||          ||| | ||||  |  ||   |   || | ||||   || || |  ||||   | ||      |                              
GAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAGgtatataaccaacttga----tgacattttcatgtataatactatttgttttg---------aattactatttcattgtcatttttttaagaatataattgatctcatgttccctaattatctatgcag--------------------------

upper sequence: Vv18s0041g02060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G25570.1 (Glycine max), 5'ss of exon 3
GAACAAGTTGAAGCTTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGCGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttttacttaccat--ttgccgtagatttgaaaggcattccttagcttacagcatgcaaatgaatattgaagagttcgtgaattgaaataaggtttattttctgtttggttatagctcctctgatttatccatcctattaactttttcag
|| ||| | ||||| |||||||| ||||| |||||||||||||| ||||| ||||| || || |||||||||   |||   || |||| ||   |  | ||||| |   | ||||       ||  | |  ||   ||    |||  ||   ||||    |     | | | || |||  |   | | ||   || |  || |||   | | |   |  ||                                   
GAGCAAATCGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAGgtatataactaacttgatgacattttcatgaat---aacactatttttttaattactatttcattgtcattttttaagcatatataattt---atcacattcattaattatcta--tgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716760|gb|FC065583.1|FC065583
EST:     CGGTATCNNNNNNNGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGG                         GTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA
genomic: CGGTATCTTTTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAACACGGgtatgttttt ... actttttcagGTTTCCAGCCAAACGGGCAAGCTCCAATCTCTTGTACAGACAAGCCATTGA