Sequence
atgc intronic sequence ATGC exonic sequenceGAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttcttgaattgttgggatactatttagacgtgcaaggaattctttaggtctattttgttgttgtaatcatgtgaaggacaaaactgatttgctacacggataatattttctaattctatctatcctattactgatcattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G35410.1 (Glycine max), 5'ss of exon 3
GAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttcttgaattgttgggatactatttagacgtgcaaggaattctttaggtctattttgttgttgtaatcatgtgaaggacaaaactgatttgctacacggataatattttctaattctatctatcctattactgatcattacag
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GAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAGgtatataaccaacttgatgacatt---ttcatgtataatactatttgttttgaattactatttcattgtcatttttttaagaatataattgatctc-----------atgttccctaatt--atctatgcag----------------
upper sequence: Vv18s0041g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G09320.1 (Glycine max), 5'ss of exon 3
GAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttcttgaattgttgggatactatttagacgtgcaaggaattctttaggtctattttgttgttgtaatcatgtgaaggacaaaactgatttgctacacggataatattttctaattctatctatcctattactgatcattacag
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GAGCAAGTTGAAGCATGGAAACCCATTGTGAATGCAGTTCATGCCAAAGGTGGTGTATTCTTTTGTCAGATTTGGCATGTTGGAAGGGTCTCAAGTCCAGgtattttctgaca-----agaatgcttatt-----cccgatcaaattt---gctctaccct-ttgtcaaagtccacacgaggaagaaattactgtg----acaaattgcggttatcaa------------------------------
upper sequence: Vv18s0041g02010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G25570.1 (Glycine max), 5'ss of exon 3
GAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttcttgaattgttgggatactatttagacgtgcaaggaattctttaggtctattttgttgttgtaatcatgtgaaggacaaaactgatttgctacacggataatattttctaattctatctatcctattactgatcattacag
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GAGCAAATCGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAGgtatataactaacttgatga-----cattttcatgaataacactatttttttaattactatttcattgtcattttttaag---catatataatttatcacattcatta-attatcta-tgcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720033|gb|FC067751.1|FC067751EST: CAGTATCTTTATTTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAAAAGAG AATTCCAGCCAAATGGGCAAGCTCCATTATCTTCTACAGACAAGGCATTGA
genomic: CAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttctt ... atcattacagAATTCCAGCCAAATGGGCAAGCTCCATTATCTTCTACAGACAAGGCATTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCAAGTTGAAGCCTGGAAGCCCATTGTAGATGCTGTTCATGCTAAAGGCAGTATCTTTAATTGTCAGCTTTGGCATGTGGGAAGAGTTTCAAACACAGgtatgttcttgaattgttgggatactatttagacgtgcaaggaattctttaggtctattttgttgttgtaatcatgtgaaggacaaaactgatttgctacacggataatattttctaattctatctatcctattactgatcattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA