1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataagtgtcacttacatgctctttgttcaacaatagcatgcaatttaatttgctctttttacttttgtctttgtttttgacaatttgaattacatgacag
species | Vitis vinifera |
transcript | Vv18s0041g01360.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG GTGGCCTCAAACTTAAAGEST: gi|161714077|gb|FC064378.1|FC064378
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAG
EST: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG GTGGCCTCAAACTTAAAGEST: gi|37188434|gb|CF607783.1|CF607783
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAG
EST: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG GTGGCCTCAAACTTAAAGAAATATGCAA
genomic: CTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataa ... tacatgacagGTGGCCTCAAACTTAAAGAAATATGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGGgtgagaataagtgtcacttacatgctctttgttcaacaatagcatgcaatttaatttgctctttttacttttgtctttgtttttgacaatttgaattacatgacag
- - - - - - - - - - TTGGAG