Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtattattttgtttgtttctaggaactttctttctgaagttgttacttaatggtaattctgcttgatttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g14500.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 3
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtattattttgtttgtttctaggaactttctttctgaagttgttacttaatggtaattctgcttgatttcag-----------------------------
||| ||||||||||||||  | |||||||| ||||| |||||||| || || |||||||| ||||||||| | |||||| | ||||||||||||||||||||| |||   || | ||   || |    |||  |||| |   |    | |  ||          |    |   |||                             
GTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGACATTTTCCTGAGGGAGCTCATCTCCAATGCTTCTGATgtatgta--gttgtattgcattttg---actccctttttagggcctattcagaacacaggaaaaggaaaaacacaggataggaaaaacgtaggaatatgaaagga

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 3
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtattattttgtttgtttctaggaactttctttctgaagttgtt--acttaatggtaat--tctgcttgatttcag
||| ||||||||||||||  | |||||||| ||||| |||||||| || || |||||||| || || ||| | |||||| | || |||||||| ||||||||| |||||  ||        | |    | | |   |      | ||   | ||||  ||  |  ||||| ||  |  ||
GTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCACTCTACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattgcttctgacccctgtgtttattctgcattgtggatggtcgaaattaactgtggtgttctgcatgtctgtag

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 3
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtattatttt------------gtttgtttctaggaa-ctttctttctgaagttgttactt-aatggtaattctgcttgatttcag---------------------
||| || || || ||||| ||||| ||||||||||| ||||| ||||| || || ||||| || || ||| | || |||||||| ||||||||||||||||||||   | ||||             ||| | | ||  || | ||   | | || || ||| || ||| ||    |   ||| |    |                     
GTTCCAAGCGGAAGTGTCGCGGCTTATGGATATCATCATCAATTCTCTCTACAGTAACAAGGATATCTTCCTCAGAGAGTTGATTTCCAATGCTTCTGATgtaagcgctttttttttaaaaaaaatatttttgtttaaaaatccttgcatttaaattttttatttgaattgttgaacgatttgttaatggcgaataatgtgcacattctag

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 3
-GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtattattttgtttgtttctaggaactttctttctgaagttgttacttaatggtaattctgcttg-atttcag---------------------------------------------------------------------------
 ||| || || || ||||| ||||| |||||||| || ||||| ||||| || || ||||| || || ||| | || |||||||| ||||||||||||||||||||  || |||| ||| ||  ||   | ||   ||   ||      |  || |  ||    || ||  ||||                                                                              
AGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAATTCTCTCTACAGTAACAAGGATATCTTCCTCAGAGAGTTGATTTCCAATGCTTCTGAtgtaagcgttttttt-tttattgttatttatttgagtt--aaaacctacatctattcatatgcttgtttacattttgaaaatccatgcatttaaattttcatccaaactccaacgatgtgttattgttaatgacaaatgatgcttgcattcta

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagta------------ttatttt-gtttgtttctaggaactttcttt--ctgaagttgttacttaatggtaattctgcttgatttcag
||| || |||||||| |||||||| ||||| || |||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||| |            || |||| ||  |||| | |||    || ||   |   |    || | | ||    |  || |   ||||||
GTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCTCTATACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagcttcgtgtacattgttttagtgagtttttgggatacctcgttaaataggggaactaataagtgtctgtgttggtgattttcag

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S126_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagt-attattttgtttgttt-ctaggaactttct--ttctgaagttgttactta----atggtaattctgcttgatttcag----------------
||| || ||||| || ||  || | ||||||||||| ||| ||||| | ||||||||||||||||| ||| |  | || |||||||||||||||||||||||||||    | ||| |  |    | |   ||||     |||| || |  |||  ||    ||   | || |  |   || ||                 
GTTCCAAGCTGAAGTCTCAAGGTTGATGGATATCATCATCCACTCTTTGTATAGCAACAAAGACATCTTCCTTCGCGAATTGATCTCCAATGCTTCTGATgtaagttgcaaatttctccgcaagccaatgacttctcaattcttaattaattatatatctcatcacagttttattaacttccaaatttatctatcggtgg

upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S8_67V6.1 (Physcomitrella patens), 5'ss of exon 4
GTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaag------tattattttgtttgtttctaggaactttctt----tctgaagttgttacttaatggt-----aattctgcttgatttcag----------
 || ||||| ||||| ||  |||| ||||||||||| |||||||| || || |||||||| || |||||  | |||||  || | |||||||| |||||||||||           |  |  |||||  |   |  |||||     || | |||   | |  | ||||      |||  | |||  || |           
ATTCCAGGCAGAGGTTTCAAGGCTGATGGATATCATCATCAACTCCCTGTACAGCAACAAGGATATTTTTCTGAGGGAACTGGTGTCCAATGCCTCTGATgtaagatatctcgccttcataattgttcttctaaggtttctaagaatcaggagtcact-cccagtggttgtcggatttcggttgtattaatttctctactc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723753|gb|EE101423.1|EE101423
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
EST: gi|161705792|gb|FC056663.1|FC056663
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCC
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCC
EST: gi|110710305|gb|EE086522.1|EE086522
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
EST: gi|352764021|gb|FQ467591.1|FQ467591
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATGAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
EST: gi|110709700|gb|EE085391.1|EE085391
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
EST: gi|110726118|gb|EE101621.1|EE101621
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
EST: gi|110724805|gb|EE100952.1|EE100952
EST:     ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGAT                         GCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT
genomic: ATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATgtaagtatta ... ttgatttcagGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGT