1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGACTAGGGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGgtaatggaaccattccattgtgattcctattgcatctgaaatgaatttatttcatgtgtccctggtgttggctataggctatacaatcattaatcattgggaaccgaaatggtaggcataatatgaatttttatacatcttcagtgagtttacatgcaatgtggtattaattgtatcatcaatgcatgttag
species | Vitis vinifera |
transcript | Vv18s0001g14460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTAGGGCCTGACGTTCGTGAAGGAAAGCGGAGACAGTTCAATTATATAG GAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGGEST: gi|122689228|gb|EC935643.1|EC935643
genomic: ACTAGGGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGgtaatggaac ... tgcatgttagGAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGG
EST: ACTAGGGCCTGACGTTCGTGAAGGAAAGCGGAGACAGTTCAATTATATAG GAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGGEST: gi|110423136|gb|EC989474.1|EC989474
genomic: ACTAGGGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGgtaatggaac ... tgcatgttagGAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGG
EST: GGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATAT-- --AGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGG
genomic: GGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGgtaatggaac ... tgcatgttagGAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTAGGGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGgtaatggaaccattccattgtgattcctattgcatctgaaatgaatttatttcatgtgtccctggtgttggctataggctatacaatcattaatcattgggaaccgaaatggtaggcataatatgaatttttatacatcttcagtgagtttacatgcaatgtggtattaattgtatcatcaatgcatgttag
- - - - - - - - - - - AAGGAA