Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATTCCGGATGGTATAGACAAGAATGGGAAACCCCACAAGCTTAGACTCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggatttgttcataaaattgtgcatttttctactttatcatttccttttgttagaagctcctgaatcattcaaacctcatgctgcctttttggacattctatgtttgggaacctgccgttgttatgaatatgctgagcgatcatccttgtcatttgaattgacctgggtaagtgcgttttggcag

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
TGTGATTCCGGATGGTATAGACAAGAATGGGAAACCCCACAAGCTTAGACTCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggatttgttcataaaattgtgcatttttctactttatcatttccttttgttagaagctcctgaatcattcaaacctcatgctgcctttttggacattctatgtttgggaacctgccgttgttatgaatatgctgagcgatcatccttgtcatttgaattgacctgggtaagtgcgttttggcag
 |||||||| || || ||||||||||| ||||| || |||||||| || || |||||||| || ||||||||  |||| |||||||| ||| | || || ||||| |  |  ||      |    ||  |  |||  | || |||| |       | | | || |   | ||    |    |||   ||||||                                                                                               
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccc----tctaacaactaactaaataatgatttaca------aaatgatcttctcttatctggaa---atggatccttttgcag-------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351024744|gb|FQ430569.1|FQ430569
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351046424|gb|FQ453040.1|FQ453040
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349811782|gb|FQ410579.1|FQ410579
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCCAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351044400|gb|FQ452952.1|FQ452952
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351045818|gb|FQ441003.1|FQ441003
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351046370|gb|FQ452986.1|FQ452986
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAAGCTTGTCTACACCAATGACCAAAGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351052122|gb|FQ455415.1|FQ455415
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCGAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351032748|gb|FQ462462.1|FQ462462
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351019671|gb|FQ439488.1|FQ439488
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351055385|gb|FQ441983.1|FQ441983
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGCGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349825116|gb|FQ415663.1|FQ415663
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351039066|gb|FQ457741.1|FQ457741
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351057238|gb|FQ450945.1|FQ450945
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|33404726|gb|CF210353.1|CF210353
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351044758|gb|FQ449012.1|FQ449012
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349816231|gb|FQ403727.1|FQ403727
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351055701|gb|FQ452166.1|FQ452166
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351035786|gb|FQ463631.1|FQ463631
EST:     TCTACTCCATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCGAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349811497|gb|FQ409493.1|FQ409493
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349814907|gb|FQ410130.1|FQ410130
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351045587|gb|FQ440772.1|FQ440772
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCGATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351056890|gb|FQ443517.1|FQ443517
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349825028|gb|FQ415575.1|FQ415575
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351053267|gb|FQ459135.1|FQ459135
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351025508|gb|FQ435201.1|FQ435201
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351044587|gb|FQ443118.1|FQ443118
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|110371343|gb|EC935294.1|EC935294
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351045767|gb|FQ440952.1|FQ440952
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349829231|gb|FQ419763.1|FQ419763
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349810724|gb|FQ402967.1|FQ402967
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349812990|gb|FQ411230.1|FQ411230
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349821990|gb|FQ408319.1|FQ408319
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349825115|gb|FQ415662.1|FQ415662
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351031903|gb|FQ460160.1|FQ460160
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351040458|gb|FQ434591.1|FQ434591
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|351052706|gb|FQ453814.1|FQ453814
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGGTA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349826752|gb|FQ418843.1|FQ418843
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|349817775|gb|FQ407764.1|FQ407764
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
EST: gi|352794268|gb|FQ479510.1|FQ479510
EST:     TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACT                         GTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA
genomic: TCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggattt ... gttttggcagGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGATTCCGGATGGTATAGACAAGAATGGGAAACCCCACAAGCTTAGACTCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggatttgttcataaaattgtgcatttttctactttatcatttccttttgttagaagctcctgaatcattcaaacctcatgctgcctttttggacattctatgtttgggaacctgccgttgttatgaatatgctgagcgatcatccttgtcatttgaattgacctgggtaagtgcgttttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA