Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttagtcatggtttatttaatttgtcactataatataggtcattatttatgtatataagtatgggtaattctactacatttgaatatatacataattgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g34860.1 (Oryza sativa), 5'ss of exon 3
TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttagtcatggtttatttaatttgtcactataatataggtcattatttatgtatataagtatgggtaattctactacatttgaatatatacataattgtt-
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TTGGGGTGGATCAAGTAGACCTGACTTCACTTGTAAAAGTACTGAAGgttagattcagataatcta-tttgttgtgcatctttgaacaattttgtcagaacactcttatgtttctgataaccctttgtggccatttgctttcatttcc
upper sequence: Vv18s0001g13610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G079109_T01 (Zea mays), 5'ss of exon 3
TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttagtcatggtttatttaatttgtcactataatataggtcattatttatgtatataagt-atgggtaattctactacatttgaatatatacataattgtt
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CTGGGGTGGTTCAAGCAGACCTGACTTCACATGTAAAAGTACCGAAGgtcgatacttcattctttgcctgcacaactttagatatgatgccggttcttttaccatgtcactcataaccc-acaactgtcattagcttttatattcatc
upper sequence: Vv18s0001g13610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G40620.1 (Glycine max), 5'ss of exon 3
TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttag--tcatggtttatttaatttgtcactataatataggtcattatttatgtatataagt--atgggtaattctactacatttgaatatatacataattgtt
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TTGGGGTGGATCTAGCAGGCCTGACTTTACATGCAGAAGCACTGAAGgtcagaaccagagttgattcagaat-tgagaatgtttaatgttgttgcttaacttgaaaagttactgtggcaaaatactaaacttgttcttg-atacaacag--
upper sequence: Vv18s0001g13610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G37460.1 (Glycine max), 5'ss of exon 3
TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttag--tcatggtttattt--aatttgtcac-tataatataggt-cattatttatgtatataagtatgggtaattctactacatttgaatatatacataattgtt
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TTGGGGTGGATCTAGCAGGCCTGACTTTACATGCAGAAGCACTGAAGgtcagaaccagagttgattcagaattgggaatgtttaatgttgttgcttaacttgaatttactgtggcaaaatgctaaacttcttcttgatatatcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110714661|gb|EE091822.1|EE091822EST: TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAG AGACTGAAGCTTGGTTCATTGATTCCTTTGAGGAGTGGCGTAAAGCCAAAA
genomic: TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttagtcatg ... tgtaacacagAGACTGAGGCTTGGTTCATTGATTCCTTTGAGGAGTGGCGTAAAGCCAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGgttagtcatggtttatttaatttgtcactataatataggtcattatttatgtatataagtatgggtaattctactacatttgaatatatacataattgtt
- - GGTGGA