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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatctcacttgcatttttttccttttgttattacattggcattttttttgttgcatatgattataatggtcatttttttttctctttaatttattcaaaaag

Basic information

species Vitis vinifera
transcript Vv18s0001g13370.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g43450.1 (Oryza sativa), 5'ss of exon 3
TAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatctcacttgcatttttttccttttgttattacattggcattttttttgttgcatatgattataatggtcatttttttttctctttaatttattcaaaaag
||||||||||||||||||||||| ||| ||| | | | | ||||| || || ||||||||||||||| | || || ||||| || | |||| || | |||||     |       |||| |  ||   |     | |||||||  | |  ||||       | |||||      ||  |||| ||  ||  || |             
TAAATTTGACATGAAGCCTCACAGTGATAATTTGGTGAACTATGGAAAGTTATGCCGTGAAAGGACACAAAAGTCCATGATCAAAACTAGAAAAGTGCAGgtgaagtac------tgcagtccttcattggctatcttacattaccgtaattttaaagcattctgattt-----gtggttttgttccctacttgaag-----------

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G03070.1 (Glycine max), 5'ss of exon 3
TAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatctcacttgcatttttttccttttgttattacattggcattttttttgttgcatatgattataatggtcatttttttttctctttaatttattcaaaaag
||| ||||| |||||||| |||  |||||| ||||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||| ||||||| ||||||     | |   ||   |  || ||| ||  |  ||    | || || | | | |   | || |||         ||| |||  |  | || ||| | |   ||  
TAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAGTATGGTAAATTGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgta-----tgtttattatttaattatcccttaatgttt---cttgctttctgtctatgataaataattg--------attatttggttcccttgattcaattggaag-

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 3
TAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatctcacttgcatttttttccttttgttattacattggcatttttt--ttgttgcatatgattataatggtcatttttttttctctttaat-ttattcaaaaag
||| ||||| |||||||| ||   |||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| ||| ||||||| ||||||  |  ||        || ||| |  |||  ||||  | ||    ||| ||  ||  ||  |||||||| |    | ||| | |     | || ||  ||||  ||   
TAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatttgttc--------atgtttattatttaattatccc-ttaatgtttcttgctttctgtctatgattaaataattgattctctgggtcccttgatactattggaag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543665|gb|CF511897.1|CF511897
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|110712491|gb|EE090172.1|EE090172
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|30303404|gb|CB980198.1|CB980198
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|30302977|gb|CB979771.1|CB979771
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|33410257|gb|CF215884.1|CF215884
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|110701992|gb|EE080196.1|EE080196
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|33408011|gb|CF213638.1|CF213638
EST:     GGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: GGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|71876173|gb|DT025228.1|DT025228
EST:     TGTGTCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|33407925|gb|CF213552.1|CF213552
EST:     AAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: AAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|45368167|gb|CK906526.1|CK906526
EST:     TGTGCCGTG-AAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|33410334|gb|CF215961.1|CF215961
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|45770574|gb|CN006426.1|CN006426
EST:     AAGAATAGACAAA-TCAG                         GTGA-TGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: AAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|110713762|gb|EE089967.1|EE089967
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|30303033|gb|CB979827.1|CB979827
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|110702596|gb|EE081122.1|EE081122
EST:     TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: TGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
EST: gi|110363914|gb|EC927546.1|EC927546
EST:     AAGAATAGACAAATTCAG                         GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT
genomic: AAGAATAGACAAATTCAGgtagctcatc ... attcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTT