Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAGAACAGCTGGCAGATGATTTACTAGAGAAAAATAAGGATTTGCATTTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaataacaattctttctccaaattcataagttccacaaccatggtatcttagttttacattttggtgacag

Basic information

species Vitis vinifera
transcript Vv18s0001g13280.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G03080.1 (Glycine max), 5'ss of exon 3
TGACAGAACAGCTGGCAGATGATTTACTAGAGAAAAATAAGGATTTGCATTTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaataacaattctttctccaaattcataagttccacaac-catggtatcttagttttacattttggtgacag
| || |||||||||||| | ||| | |||||||| |||||||||||||| |||||||| || |||||||| |||||| ||||||| ||||| ||||||||||| | | |  |  | || | |||| |       | |||  | |   | || | || |||  || ||||||  || |||
TTACTGAACAGCTGGCAAAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGgtgagcagag-attagttttctctctaggaaagcatgttgtaaacttcctgctttcatagaatttcattttattggcag

upper sequence: Vv18s0001g13280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G03120.2 (Glycine max), 5'ss of exon 3
TGACAGAACAGCTGGCAGATGATTTACTAGAGAAAAATAAGGATTTGCATTTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaataacaattctttctccaaattcataagttccacaac-catggtatcttagttttacattttggtgacag
| || |||||||||||| | ||| | |||||||| |||||||||||||| |||||||| || |||||||| |||||| ||||||| ||||| ||||||||||| | | |  |  | || | |||| ||    | |  ||  | |   | || | || ||   || ||||||  || |||
TTACTGAACAGCTGGCAAAAGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTCTGCTCAAGGAAATGgtgagcagag-attagttttgtctctaagagaacacattgtaaacttcctgctttcatataatttcattttattggcag

upper sequence: Vv18s0001g13280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G07670.1 (Glycine max), 5'ss of exon 3
TGACAGAACAGCTGGCAGATGATTTACTAGAGAAAAATAAGGATTTGCATTTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaataacaattctttctccaaattcataagttccacaac-catggtatcttagttttacattttggtgacag
| || |  ||||||||| | ||| | || ||||| ||||| |||||||  ||||||||||| |||||||| |||||  | ||||| ||||| | ||||||||  | |  | |  |||| |   |||||      | ||| || |   | || | || |||  |  ||| ||  || |||
TCACGGGGCAGCTGGCACAGGATATTCTGGAGAACAATAACGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGAAATGgtaag-atgagattaattttacttccaagagagcatgttgcaaacttcttgctttcatagaatctcatgttattggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712193|gb|EE089538.1|EE089538
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|349813259|gb|FQ411499.1|FQ411499
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|110713521|gb|EE089516.1|EE089516
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTCGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|110718275|gb|EE094924.1|EE094924
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|294965909|gb|GW839248.1|GW839248
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCCTTTTGGAAAAG
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCC-TTTTGGAAAAG
EST: gi|349820159|gb|FQ404881.1|FQ404881
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|349807500|gb|FQ401493.1|FQ401493
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|110712714|gb|EE088002.1|EE088002
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|351013733|gb|FQ433885.1|FQ433885
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|71889960|gb|DT039015.1|DT039015
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         -A-AG---CTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|71883071|gb|DT032126.1|DT032126
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         -A-AG---CTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
EST: gi|349815412|gb|FQ400567.1|FQ400567
EST:     TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTCGTATGCTCCAGGAAATG                         CACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT
genomic: TTTGATCTTCTTAGCCTTCACTTTGTTAAGCTTGTATGCTCCAGGAAATGgtgtgtaaaa ... ttggtgacagCACAGAAGCTCTGGAATTTGCTCAGACAAAGTTGACCCCTTTTGGAAAAGT