Sequence
atgc intronic sequence ATGC exonic sequenceATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 3
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatct---caaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattgg----tttgttaacattgttctaattgagatttc-atgtttctcccag-
||| |||||||| ||||| |||||||| || || || |||||||||||| || | ||||| |||||||||||| | | || || || || || ||||||| | | | | || | || || | || | || ||| | | || | | | | | | | ||| ||||| | | | ||| || | || | | ||||||
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCACTGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagttatccgatttgaaaaatataatcaacttattttggttgatcctgttttatttgatcaactgtactgtttttttgaaatcgttgttcatgctatactactttggtttcctgtctttctctttag
upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 3
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgta----atctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccag
||| |||||||| |||||||||||||| || || || |||||||||||| || | ||||| || ||||||||| | | || || || || || ||||||| |||| | | | | ||| ||| ||| || |||||| || || | || || | | || || | |||| | | ||| | || | |||| | | |
ATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGGCCAATATGATCCAATGGAGGAAAGAATATGGTACAGATACAATTATGGAGgtgatccatcttatacattaatatatgttta-atttgataatctgaa-cattgatttttttctt-tctttcggaatttggggttcatgtatattac----actgtggtttctactctatag---
upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 3
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaa--tctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggttt--ctcagatctattggtttgttaacattgttctaattgagatttcatgtt--tctcccag------------
||| |||||||| ||||| |||||||| || || ||||||||||||||| || | ||||| || ||||||||| | | || || || || || ||||||| | || |||| | ||| | | || | | || | || | | || || | | || |||| || | || || | ||| || | || | |||
ATTCTTGAAAGCAAGGAAATTTGATATTGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttag
upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ28804 (Selaginella moellendorffii), 5'ss of exon 2
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccag
||||||||||||||||| ||| ||| |||| ||||| ||||| |||||| |||| ||| | || ||| | | | ||| ||| || || ||||| | | | | | | ||| || ||| |||||| || || || | || | |
ATTTTTGAAAGCCAGGAGGTTCGATCTGGAGAAGGCCAAGCAAATGTGGGCCGATATGCTGCAATGGCGCAGGGAAAACGGTGTCGATACGATTGAAGAGgtcggtgcca-tccatttaaaagcttacggctggttctctt---taatgttttgtt-cttcttctttggactgtctag------------------------------------------
upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ17479 (Selaginella moellendorffii), 5'ss of exon 2
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccag
||||||||||||||||||||| ||| |||| ||||| ||||| |||||| |||| ||| | || ||| | | | ||| ||| || || ||||| | | | | | | ||| || ||| |||||| || || || | || | |
ATTTTTGAAAGCCAGGAAGTTCGATCTGGAGAAGGCCAAGCAAATGTGGGCCGATATGCTGCAATGGCGCAGGGAAAACGGTGTCGATACGATTGAAGAGgttggtgcca-tccatttaaacgcttacggctggttctctt---taatgtttt-tttcttcttctttggactgtctag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407754|gb|CF213381.1|CF213381EST: CCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAG GATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGT
genomic: CCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatctcaa ... tttctcccagGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGgtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG