1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTCAAGTTCCTTGCCCCTAGCCAACACAAAGGAGCGGTTCATGGAAAATATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaacagttgattttacgcttttattggcttgtgtgttttttgtattcatatacatatatattgtgggtggttggtggttgcag
species | Vitis vinifera |
transcript | Vv18s0001g12680.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTG GTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACCEST: gi|32458990|gb|CD800164.1|CD800164
genomic: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaac ... gtggttgcagGTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
EST: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTG GTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACCEST: gi|56409682|gb|CX017934.1|CX017934
genomic: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaac ... gtggttgcagGTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
EST: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGTTG GTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACCEST: gi|56409031|gb|CX017283.1|CX017283
genomic: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaac ... gtggttgcagGTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
EST: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTG GTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACCEST: gi|110369386|gb|EC933544.1|EC933544
genomic: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaac ... gtggttgcagGTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
EST: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTG GTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
genomic: ATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaac ... gtggttgcagGTGGACAAGGAGCAACTGGGCATATCTGAATGAACCTCCAGTAATCGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAAGTTCCTTGCCCCTAGCCAACACAAAGGAGCGGTTCATGGAAAATATCATTGAAACTGGAACAGACTTGGAGAAGCTTTTACAGAAAAATGGCTGgtagatcaacagttgattttacgcttttattggcttgtgtgttttttgtattcatatacatatatattgtgggtggttggtggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC