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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTCTATTTGGTTCTTTATCAAATGTGGGCGCCATGGTTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaaatcattcatcgtttttccttactaacggctagtgtttcgctttcaataaccgacttttgtttttttttcctttttctttgataaactgaag

Basic information

species Vitis vinifera
transcript Vv18s0001g12560.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 3
TACTCTCTATTTGGTTCTTTATCAAATGTGGGCGCCATGGTTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaaatcattcatcgtttttccttac-taacggctagtgtttcgctttcaataaccgacttttgtttttttttcctttttctttgataaactgaag------------------------
|  ||| | ||||||||||| || |||||||| ||||||||||| |||||||||   ||||||||| | || || || ||||| |||||||||   |    ||  |  |    | |  |||  |    |||  |  ||   ||||||||   || |||      |    |   ||   ||| | ||| |                           
TTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATAGCCAGTGGTCAGATTGCCGAGTACATAGGGCGCAAAGGGgtacccttttttctcttttttcgtgtgtttatgtgtatgcttttcctttaatttcaatatttgagtttgagggatgaggctaattcaattggtcaacgggttacaatttcttgtctgaaattgcag

upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G36950.1 (Glycine max), 5'ss of exon 3
-TACTCTCTATTTGGTTCTTTATCAAATGTGGGCGCCATGGTTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaaatcattcatcgtttttccttactaacggctagtgtttcgctttcaataaccgacttt---tgtttttttttcctttttctttgataaactgaag-------------------
 |  ||| | ||||||||||| || |||||||| ||||||||||| ||||| ||    ||||||||| |||| || || ||||| |||||||||        |  ||  || ||||||  |    | | ||  |  ||    | |||||   || |||    | |     |  ||   |  |  |     |  |                    
GTTTTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATTGCTAGTGGTCAGATTGCTGAGTACATAGGGCGCAAAGGggtacccctt--ttttttctcttttttctatgtgtatg-cttttcctttaactgcaatatttgagtttgagggatgagactaactcaatggtcaacgggttacaatttcttgtctgaaattgca

upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G75220.1 (Arabidopsis thaliana), 5'ss of exon 3
TACTCTCTATTTGGTTCTTTATCAAATGTGGGCGCCATGGTTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtagg-------atgaaatcattcatcgtttttccttactaacggctagtgtttcgctttcaataaccgacttttgtttttttttcctttttctttgataaactgaag
|||||| | ||||||||| | || |||||||| || |||||||| ||||| |||   ||||||||| | ||||| ||||| ||||||||||||         ||   ||  || |||||| |   |||    |   |  |      || |   |  | |   |     | || ||   ||||||| || |        
TACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGGgtatactttgttatctgattcttgatcgttctgttttagatccattttataaagtcctctttcttgc-gttctaaacatcttattgtgttttcttggacag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687404|gb|EE064795.1|EE064795
EST:     TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGG                         TCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
genomic: TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaa ... taaactgaagTCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
EST: gi|110701968|gb|EE080148.1|EE080148
EST:     TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGG                         TCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
genomic: TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaa ... taaactgaagTCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
EST: gi|110699858|gb|EE077237.1|EE077237
EST:     TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGG                         TCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
genomic: TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaa ... taaactgaagTCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
EST: gi|110732428|gb|EE107716.1|EE107716
EST:     TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGG                         TCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA
genomic: TTGGGGCAATAGCCTCCGGTCAGATTTCTGAATATATTGGGCGAAAAGGGgtaggatgaa ... taaactgaagTCATTGATGATTGCTGCAATTCCTAATATAATCGGATGGCTCACAATATCA