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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATGGGGTCAAATGCCTGCACTGGTACGCGAGATGGGGGGCCTCTTGCTGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacctttgaactctctctctctctctctctctctctctctctctaaagatagcatttcatagtataggaatacccctttgatttgggatgtgtct...

Basic information

species Vitis vinifera
transcript Vv18s0001g12240.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359129|gb|EC920108.1|EC920108
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|30125798|gb|CB911137.1|CB911137
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         GTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|30303182|gb|CB979976.1|CB979976
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATAGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|110407496|gb|EC973098.1|EC973098
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|26266150|gb|CA817213.1|CA817213
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|110418092|gb|EC984208.1|EC984208
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCT---ATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|110416686|gb|EC982683.1|EC982683
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCT---ATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|30128120|gb|CB913459.1|CB913459
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|28969684|gb|CB348717.1|CB348717
EST:     CTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: CTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|110357738|gb|EC921444.1|EC921444
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|30303119|gb|CB979913.1|CB979913
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATAGAGATATAATCAAG                         TNTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagT-TGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTT
EST: gi|110395348|gb|EC961009.1|EC961009
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|26264105|gb|CA815168.1|CA815168
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
EST: gi|110395260|gb|EC960918.1|EC960918
EST:     TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAG                         TTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT
genomic: TGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacct ... gatggagcagTTGGGAATGCCTGGATTTAAGAGCGCAATGAATGGCTTCTACTTTTTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGATGGGGTCAAATGCCTGCACTGGTACGCGAGATGGGGGGCCTCTTGCTGCTGCTGCTATCTTGATGTCCAAAAAACTTTCATGGAGATATAATCAAGgtttttacctttgaactctctctctctctctctctctctctctctctctaaagatagcatttcatagtataggaatacccctttgatttgggatgtgtct

- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata