1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCATCCCCGTCTTTTTCTGCTTCCGTCTTCTCAGTCATGAACGCCCTTGGAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctgtttgagttctaaattgttagattctctcttcctctctcttaagaaacctccaaagtatttattattgaaggtgtccggttagtcactaaaggggatttcatttgatttctttcag
species | Vitis vinifera |
transcript | Vv18s0001g11300.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAG GCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGGEST: gi|351028439|gb|FQ427335.1|FQ427335
genomic: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctg ... tttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
EST: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAG GCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
genomic: GAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctg ... tttctttcagGCAACAATGCCGTCAACCTTTAAGCACCCTGCTCATGTTCCTATGTGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCCCCGTCTTTTTCTGCTTCCGTCTTCTCAGTCATGAACGCCCTTGGAATTGTGGCCTTTGCATTCAGAGGTCACAATTTAGCCATGGAGATCCAGgtacgttctgtttgagttctaaattgttagattctctcttcctctctcttaagaaacctccaaagtatttattattgaaggtgtccggttagtcactaaaggggatttcatttgatttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC