1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TCTCCTGTACCAATCACTCCAGATTATGGGGAGCAGGCAGTTCGTTATGCTGATGGAATATTTGATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAGgtagcttatcgagaataccttttattcccaggacttaagtggtccatttttttaagtatgcactatctgtttcctttctatatgatacttacgtattgacttctctgtatgtttcaattttatag
species | Vitis vinifera |
transcript | Vv18s0001g11150.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGATGGAATATTTGATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAG ATTCTCGTGAAAGCAGTTTAAATCCAAGCACAACAATTGTGGCAATAGACCEST: gi|352777273|gb|FQ473907.1|FQ473907
genomic: TGATGGAATATTTGATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAGgtagcttatc ... aattttatagATTCTCGTGAAAGCAGTTTAAATCCAAGCACAACAATTGTGGCAATAGACC
EST: TGATGGAAT-TT-GATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAG ATTCTCGTGAAAGCAGTTTAAATCCAAGCACAACAATTGTGGCAATAGACC
genomic: TGATGGAATATTTGATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAGgtagcttatc ... aattttatagATTCTCGTGAAAGCAGTTTAAATCCAAGCACAACAATTGTGGCAATAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCTGTACCAATCACTCCAGATTATGGGGAGCAGGCAGTTCGTTATGCTGATGGAATATTTGATTCACGGTTTGACCGTTATGTCACTGTGAGGGAAGgtagcttatcgagaataccttttattcccaggacttaagtggtccatttttttaagtatgcactatctgtttcctttctatatgatacttacgtattgacttctctgtatgtttcaattttatag
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