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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATGGAAACCTAATCACCATTCTCAGCATCGATGGAGGTGGAATAAGAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaatataaggttttacatgataataacaaaatatggcctttccatttgccttttaaaattaatatatacctaatctcgaacttatatatcctatattcgatatattttataagtactaacactagattgtttggccatggtgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g10830.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030287|gb|FQ432225.1|FQ432225
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351027065|gb|FQ439926.1|FQ439926
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351020359|gb|FQ445966.1|FQ445966
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161707591|gb|FC055647.1|FC055647
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161712383|gb|FC061688.1|FC061688
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349824177|gb|FQ417564.1|FQ417564
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351033038|gb|FQ446391.1|FQ446391
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349823760|gb|FQ415171.1|FQ415171
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|351043945|gb|FQ431376.1|FQ431376
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|349824179|gb|FQ417566.1|FQ417566
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
EST: gi|161718144|gb|FC068893.1|FC068893
EST:     GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAG                         AAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA
genomic: GAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaata ... catggtgcagAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTATGGAAACCTAATCACCATTCTCAGCATCGATGGAGGTGGAATAAGAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGgtaggaaatataaggttttacatgataataacaaaatatggcctttccatttgccttttaaaattaatatatacctaatctcgaacttatatatcctatattcgatatattttataagtactaacactagattgtttggccatggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT