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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGgtattgctttgaatcaattaacttcatcattaattgggatttcgttctttggttatttactccttgttactaactgaaacttcatgaagaatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g10310.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G050861_T01 (Zea mays), 5'ss of exon 3
ACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGgtattgctttgaatcaattaacttcatcattaattgggatttcgttctttggttatttactccttgttactaactgaaacttcatgaagaatgcag
| ||||| ||||| || || ||||| ||||| ||||| || |||   ||||||||||| ||||| ||| ||||||| |||||  | |||||||| |||||||||    ||   | | |||   | |   | | |   | |||  | || |   ||| | ||     |   | ||  ||   |  |||||       
ATAATGGAAACTTGGAGCAATGGCTCCATGGGGATGTTGGCCCTGTGAGCCCTCTTACATGGGATATCAGAATGAAGATTATTCTGGGAACAGCAAAAGGgtatgcactttgctgactta---ttactgt-agtcttgtttttttgctgtcactatctgcttacattattttacctaa---ttgtgaag-------

upper sequence: Vv18s0001g10310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ22711 (Selaginella moellendorffii), 5'ss of exon 4
ACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGgtattgctttgaatcaattaacttcatcattaattgggatttcgttctttggttatttactccttgttac-taactgaaacttcatgaagaatgcag
||||||||||||||||||||||||| || ||    ||||  |    ||   | |     |||||    || ||||| ||  |  | || || ||||||| |||        || |||  ||     |  || |    ||  |  ||  ||| |     |||| || || | | || |                    
ACAATGGGAACTTAGAACAGTGGCTCCACGGCCCGGTGGCCCTATCCAAAACACCAGGCTGGGATGCTCGCATGAAGATCGTTCTCGGCACCGCCAAAGCgtaagctccaaaaccaaagaagaaagt--ttga--aagaactgattgattgatatcaaactctttctttcatcacag--------------------