Sequence
atgc intronic sequence ATGC exonic sequenceTAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaatacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g10940.1 (Oryza sativa), 5'ss of exon 3
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaatacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc-----
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AAGTTTGATATTTGAATATGTAAACAGCACAGATTTCAAAGTTCTGTATCCAACATTGACAGACTATGATATTCGATTCTACATTTATGAACTTCTTAAGgtag----cgcttctgttttaatttagtcattagtagaagtgttgaaaatttcagctcttgtgatgaatat-agttgtcaatacttgggtctgattgttcctatc
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G39950.1 (Glycine max), 5'ss of exon 3
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaa--tacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc
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CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtagtatgatccttcaatctcatgtattatacttggtactgccattctttatgtcctctccgtaatcaacatattgtttttccataaacaaaattggagt--
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G05340.2 (Glycine max), 5'ss of exon 3
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaa--tacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc
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CAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGgtaatatgatccttcaatctcctgtattatacttggtactaccattctttatgtcctctccataatcaacatattgtttttccttaaacaaaattggagt--
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G17790.1 (Glycine max), 5'ss of exon 3
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaatacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaa-aatttcttcattc--
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TAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGgtaacattacccttcaatctctcatggt--ataccttgactgatgctctgtgtcctatccataatgtatat-atttctcctttacagtaattggagcatcttt
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G22250.1 (Glycine max), 5'ss of exon 3
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaatacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc---
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TAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGgtaacgtgatccttcaatctctcatggt--ataccttgactggtgctctgtgtcctctccataatgtatat-attggagtatctttgtcttggacaaggcttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860686|gb|DT009741.1|DT009741EST: CTACATTGACAGATTATGACATACGCTATTACATATATGAGCTTCTCAAG GCATTAGATTACTGCCATTCACAAGGTATAATGCATAGAGATGTCAAACCT
genomic: CTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccct ... tgaatatcagGCATTAGATTACTGCCATTCACAAGGTATAATGCATAGAGATGTCAAACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCTTGATTTTTGAATATGTGAACAGTACAGATTTTAAAGTTTTGTACCCTACATTGACAGATTATGACATACGCTATTACATATATGAGCTCCTCAAGgtttttccctcttccaatctgatgtagtcaatacttttgaaactgcttattttctgttttttaacaagggccaattgaccctcagaaaatttcttcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat