1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAATGTGGCATTCTGACTGATGAAGGCATAGCAATTGAAGGTCCAGTATTTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttccatttctaattacaccatcttagcagcatataggtgtgtctggaaccaaattttaggatgaatggcttccaatggccactgggattcactg...
species | Vitis vinifera |
transcript | Vv18s0001g09150.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAG GTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTGEST: gi|27580854|gb|CB003549.1|CB003549
genomic: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttcc ... tcttgtacagGTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTG
EST: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAG GTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTGEST: gi|110689058|gb|EE064960.1|EE064960
genomic: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttcc ... tcttgtacagGTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTG
EST: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAG GTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTGEST: gi|18458580|gb|BM436858.1|BM436858
genomic: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttcc ... tcttgtacagGTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTG
EST: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAG GTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTG
genomic: TTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttcc ... tcttgtacagGTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGTGGCATTCTGACTGATGAAGGCATAGCAATTGAAGGTCCAGTATTTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGgtgcatttccatttctaattacaccatcttagcagcatataggtgtgtctggaaccaaattttaggatgaatggcttccaatggccactgggattcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggatgaa