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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCACAACTTGATGATTATGTAAATACCCCTGGTGTTGAAACCAGGGTCCCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgccgctctaccctgtttctttctttcttggtaatcttttcagcttaaacatgtgctccacaatttcaacacatttgggccgtttttgactcct...

Basic information

species Vitis vinifera
transcript Vv18s0001g08800.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714095|gb|FC063813.1|FC063813
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|352791336|gb|FQ475026.1|FQ475026
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351016791|gb|FQ424218.1|FQ424218
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351029064|gb|FQ435264.1|FQ435264
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|161712013|gb|FC060042.1|FC060042
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTG
EST: gi|351016835|gb|FQ424262.1|FQ424262
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTCCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351017596|gb|FQ435949.1|FQ435949
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351040325|gb|FQ434457.1|FQ434457
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAAATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|352785773|gb|FQ475776.1|FQ475776
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351029160|gb|FQ435360.1|FQ435360
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351042715|gb|FQ431192.1|FQ431192
EST:     CCTAGCTTTGGTTCTACCCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351030044|gb|FQ430786.1|FQ430786
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351036933|gb|FQ459455.1|FQ459455
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351020090|gb|FQ445697.1|FQ445697
EST:     CCTAGCTTTGGTTTTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|349829097|gb|FQ419629.1|FQ419629
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|161717630|gb|FC067892.1|FC067892
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|352789683|gb|FQ476281.1|FQ476281
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
EST: gi|351029180|gb|FQ435380.1|FQ435380
EST:     CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAA                         GCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG
genomic: CCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgcc ... ccattggcagGCGCATCACAGCATACATGGGGCCCCTGGTGAAATCTCTGGAGCAAATGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCACAACTTGATGATTATGTAAATACCCCTGGTGTTGAAACCAGGGTCCCTAGCTTTGGTTCTACTCGCTCCCTTCTTCATTTAGATCCTCATCTCAAgtaagccgccgctctaccctgtttctttctttcttggtaatcttttcagcttaaacatgtgctccacaatttcaacacatttgggccgtttttgactcct

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