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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCCCAGAGGCTGGCTACTTCAGAAGAACCTAGATGTCGTTCTCCCCATTAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaattatgagaaagcgttgatacactttcaactcgtgcatatttgtaagttttaagcttgatggttggggagattgacctgtcaaagaaaatttag...

Basic information

species Vitis vinifera
transcript Vv18s0001g08150.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884768|gb|DT033823.1|DT033823
EST:     TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCA
EST: gi|71889916|gb|DT038971.1|DT038971
EST:     TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
EST: gi|352782114|gb|FQ470016.1|FQ470016
EST:     TAAGTGATGGAACTTCAACCTGTAATCTTGAAACTGGGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
EST: gi|71889101|gb|DT038156.1|DT038156
EST:     TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
EST: gi|351025492|gb|FQ435184.1|FQ435184
EST:     TAAATGATGGAACTTCAACCTGTAATCTTGAAGCTTGGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGGACCTCATTCTCAGGCGGATCACA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
EST: gi|110699782|gb|EE077082.1|EE077082
EST:     TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTAGAGCTTGAAACAG                         TTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA
genomic: TAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaatta ... ttcatggcagTTGCTGCTATCATTTTATGTTGGTTGGTACCTCATTCTCAGGCGGATCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCCCAGAGGCTGGCTACTTCAGAAGAACCTAGATGTCGTTCTCCCCATTAAATGATGGAACTTCAACCTGTAATCTTGAAACTTGGAGCTTGAAACAGgtcagaattatgagaaagcgttgatacactttcaactcgtgcatatttgtaagttttaagcttgatggttggggagattgacctgtcaaagaaaatttag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa