1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAACTGTGGCTCACATCTCTGGTATTGGTTTAAAAGTTATTCCCACCATATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGgtatgtgctttagtccgaagctcttagctgaaaagaattttcagcagttagaaagtatagatggtcccgacttaacagctttgctttgttcctcttcttcatcatcatcaatttgcag
species | Vitis vinifera |
transcript | Vv18s0001g05780.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAG TCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGTEST: gi|37189709|gb|CF609058.1|CF609058
genomic: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGgtatgtgctt ... caatttgcagTCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGT
EST: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAG TCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGTEST: gi|33403648|gb|CF209275.1|CF209275
genomic: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGgtatgtgctt ... caatttgcagTCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGT
EST: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAG TCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGT
genomic: ATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGgtatgtgctt ... caatttgcagTCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACTGTGGCTCACATCTCTGGTATTGGTTTAAAAGTTATTCCCACCATATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGgtatgtgctttagtccgaagctcttagctgaaaagaattttcagcagttagaaagtatagatggtcccgacttaacagctttgctttgttcctcttcttcatcatcatcaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA