Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagcatctaattcctctgttgaagctcatcttacctctcactttgtcattgttttatttttttcaccctcctttaatttttgatttccgtagttcagaaacagggtgctagttcaattaattttttatgctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g05720.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83277401|gb|DV941409.1|DV941409
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110709573|gb|EE085152.1|EE085152
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351056616|gb|FQ442444.1|FQ442444
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|349828294|gb|FQ416247.1|FQ416247
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCACCTACTCATCGAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110397825|gb|EC963748.1|EC963748
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30129889|gb|CB915228.1|CB915228
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351025290|gb|FQ434303.1|FQ434303
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|37189890|gb|CF609239.1|CF609239
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71890616|gb|DT039671.1|DT039671
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110364443|gb|EC924186.1|EC924186
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30133232|gb|CB918571.1|CB918571
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351054545|gb|FQ452021.1|FQ452021
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71890882|gb|DT039937.1|DT039937
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|32244981|gb|CD710800.1|CD710800
EST:     CAGGGAATGCCCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71886552|gb|DT035607.1|DT035607
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|34363089|gb|CF404674.1|CF404674
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30254150|gb|CB971165.1|CB971165
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71882296|gb|DT031351.1|DT031351
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351012745|gb|FQ430308.1|FQ430308
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|87586625|gb|DY474825.1|DY474825
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110405257|gb|EC970796.1|EC970796
EST:     GGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: GGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|27755229|gb|CB035984.1|CB035984
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|32245214|gb|CD711033.1|CD711033
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|18458782|gb|BM437060.1|BM437060
EST:     GACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: GACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71857173|gb|DT006228.1|DT006228
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71890887|gb|DT039942.1|DT039942
EST:     CGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71890644|gb|DT039699.1|DT039699
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110395364|gb|EC961026.1|EC961026
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110364219|gb|EC923597.1|EC923597
EST:     AGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: AGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110701469|gb|EE079073.1|EE079073
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110422906|gb|EC989240.1|EC989240
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30134657|gb|CB919995.1|CB919995
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110417293|gb|EC983336.1|EC983336
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71865310|gb|DT014365.1|DT014365
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110419923|gb|EC986180.1|EC986180
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110700774|gb|EE077725.1|EE077725
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|27580489|gb|CB003184.1|CB003184
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71887923|gb|DT036978.1|DT036978
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351040928|gb|FQ443704.1|FQ443704
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110370298|gb|EC929339.1|EC929339
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110411588|gb|EC977309.1|EC977309
EST:     GGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: GGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|18459307|gb|BM437585.1|BM437585
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30300606|gb|CB977400.1|CB977400
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351026498|gb|FQ428510.1|FQ428510
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|18458453|gb|BM436731.1|BM436731
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|34549688|gb|CF517920.1|CF517920
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|18458948|gb|BM437226.1|BM437226
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|294966583|gb|GW837718.1|GW837718
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351038901|gb|FQ457576.1|FQ457576
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30253800|gb|CB971085.1|CB971085
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30300673|gb|CB977467.1|CB977467
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71883642|gb|DT032697.1|DT032697
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|352798988|gb|FQ480837.1|FQ480837
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|34362955|gb|CF404540.1|CF404540
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71873026|gb|DT022081.1|DT022081
EST:     AGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: AGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|34544771|gb|CF513003.1|CF513003
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110708623|gb|EE086376.1|EE086376
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71890727|gb|DT039782.1|DT039782
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110716449|gb|EE091439.1|EE091439
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110368574|gb|EC932559.1|EC932559
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|77587121|gb|DV222691.1|DV222691
EST:     CGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|161721649|gb|FC069779.1|FC069779
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351036204|gb|FQ464049.1|FQ464049
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|161712664|gb|FC062236.1|FC062236
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|77579060|gb|DV218356.1|DV218356
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351022476|gb|FQ446998.1|FQ446998
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110708397|gb|EE085894.1|EE085894
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|351033022|gb|FQ461911.1|FQ461911
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|30133595|gb|CB918934.1|CB918934
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110715051|gb|EE092660.1|EE092660
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|71884972|gb|DT034027.1|DT034027
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|45770683|gb|CN006535.1|CN006535
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110398286|gb|EC964539.1|EC964539
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|110699231|gb|EE076048.1|EE076048
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
EST: gi|34319532|gb|CF372286.1|CF372286
EST:     CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAG                         GCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA
genomic: CAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagca ... tatgctgcagGCTGCCACCAGTACAGCTGCCTCAGATCTGCCGCCTACTCATCCAATCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCGTAAAGAAGCTGCTGATCAGTCACTTAAGGCCTATGAGgtccttagcatctaattcctctgttgaagctcatcttacctctcactttgtcattgttttatttttttcaccctcctttaatttttgatttccgtagttcagaaacagggtgctagttcaattaattttttatgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT