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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttcttaagtggttttctttgaagtttttctgatccctaagctgctaaaatcctttgaaatattttatgttattttgatgtattgatggccatga...

Basic information

species Vitis vinifera
transcript Vv18s0001g03150.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579621|gb|CB002316.1|CB002316
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|110371933|gb|EC936069.1|EC936069
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|71873170|gb|DT022225.1|DT022225
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|110709129|gb|EE084317.1|EE084317
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|110382676|gb|EC946993.1|EC946993
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|46910084|gb|CN545459.1|CN545459
EST:     CAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: CAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|27580878|gb|CB003573.1|CB003573
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|83275290|gb|DV938441.1|DV938441
EST:     TGCCTACAAGTTTTNCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: TGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|30321569|gb|CD004831.1|CD004831
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|27580470|gb|CB003165.1|CB003165
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
EST: gi|27581639|gb|CB004334.1|CB004334
EST:     GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA                         TATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT
genomic: GAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttct ... tggctcatagTATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACAgtatgtttcttaagtggttttctttgaagtttttctgatccctaagctgctaaaatcctttgaaatattttatgttattttgatgtattgatggccatga

- - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaaaa