1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAAAAATGGGGCGGTAGTGGGAACAACGCGCAAGGATGTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtgcgttatttcaaaggatctgtctcttcctacatatatctattgtgataaggtgtcatatgtgtgattaaaactctgcaaatgttgcatctt...
species | Vitis vinifera |
transcript | Vv18s0001g03070.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGA GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGEST: gi|351024543|gb|FQ426352.1|FQ426352
genomic: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtg ... aactgaatagGGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG
EST: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGA GGTTACTGTCAACTTCGGGGCAGATCCCTTTTGTTTTGATCTCAAGEST: gi|351028513|gb|FQ444794.1|FQ444794
genomic: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtg ... aactgaatagGGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG
EST: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGA GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAGEST: gi|110422400|gb|EC988722.1|EC988722
genomic: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtg ... aactgaatagGGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG
EST: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGA GGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG
genomic: GTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtg ... aactgaatagGGTTACTGTCAACTTCGGGGCAGATCCATTTTGTTTTGATCTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAATGGGGCGGTAGTGGGAACAACGCGCAAGGATGTGAAGGGTCGCTTATATCCTACAGTTGCTGTTCACAGTCAAAATGAGGAgtatgttgtgcgttatttcaaaggatctgtctcttcctacatatatctattgtgataaggtgtcatatgtgtgattaaaactctgcaaatgttgcatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa