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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGCCTGAGGGGAAATTCTTCTTCTCTGCCACCAGTGGAGCTGATAAGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttcccgaaccataataatggttttctcccttagtcacatctatttataattatcggaatcatgaggcttattgatatgatgtctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g01940.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G08440.1 (Glycine max), 5'ss of exon 2
ATTAGAGCCTGAGGGGAAATTCTTCTTCTCTGCCACCAGTGGAGCTGATAAGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttcccgaaccataataatggttttctcccttagtcacatctat-ttataattatcggaatcatgaggcttattgatatgatgtctgcag
| | ||||| || || ||||| | ||||||||| ||   ||| || || ||||| ||||||||| ||||||||||||||||||||||  |||||||||||||| |  |    |||  |    | |||       |   |  ||||||| || ||||||  |   |  |  | ||| |                 
ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgacctgatggtttgttaatcatatctttttcatctatcttgtaattagtgtggtactatgtcttctcag--------------

upper sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G27570.1 (Glycine max), 5'ss of exon 2
ATTAGAGCCTGAGGGGAAATTCTTCTTCTCTGCCACCAGTGGAGCTGATAAGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttcccgaaccataataatggttttctcccttagtcacatctatttataattatcggaatcatgaggcttattgatatga-tgtctgcag
| | ||||| || || ||||| | ||||||||| ||   ||| || || || || ||||||||  ||||||||||||||||||||||  |||||||||||||| |  |    | |    | |||||||      | | ||  |||| |||  | |||||      |   ||  |  |  ||||  | |   |||
ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgagc----tgatggtttg-----tgaatcgtatcttttt-catttatcttttgtaattggtgtgctattatgtctcttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429290|gb|EC995781.1|EC995781
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351013532|gb|FQ425563.1|FQ425563
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|349825032|gb|FQ415579.1|FQ415579
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351025087|gb|FQ433504.1|FQ433504
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|349812059|gb|FQ410856.1|FQ410856
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTGAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|110690904|gb|EE068398.1|EE068398
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351049075|gb|FQ431619.1|FQ431619
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351014311|gb|FQ437313.1|FQ437313
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|110729569|gb|EE105653.1|EE105653
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351049132|gb|FQ449854.1|FQ449854
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|110426354|gb|EC992760.1|EC992760
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351012422|gb|FQ427023.1|FQ427023
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|33403447|gb|CF209074.1|CF209074
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|351046326|gb|FQ448631.1|FQ448631
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
EST: gi|349825031|gb|FQ415578.1|FQ415578
EST:     AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAAT                         GAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA
genomic: AGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttccc ... atgtctgcagGAGAGCAAGGCTAGTATAGGCTTAAGAAACATCCGCTACCTTGTGAAGAAA