Sequence
atgc intronic sequence ATGC exonic sequenceGCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaaatgactattggtaaatcttgagcacaaagatgcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G042295_T01 (Zea mays), 5'ss of exon 3
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaa--gaaaagctttttccatttaaactgggttaagaaatgactattggtaaatcttgagcacaaagatgcag
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GCAATGGTAGCAGCATTTGCAACACGCCGGTTATTATATCCAAGCCAAGCGTTTGATATGATTCATTGCTCACGCTGCCGAATAAATTGGACTCGTGATGgtgagctgtgattgctatataattatttttaattaaacaccgcactctttgtttgttgcctttctgtatcttcgcagtttgtctgaatgctcactttttt--
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G092120_T02 (Zea mays), 5'ss of exon 3
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaaatgactattggtaaatcttgagcacaaagatgcag-----
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GCAATGGCAGCAGCATTTGCAACGCGCCGGTTGTTATATACAAGCCAAGCGTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtgattactatataattatttttaattaa--cattgcacacttagtttgtcaccatgc-tgtatcttgata--tcttcatagttaggctgaatgctca
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 3
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaaatgact---attggtaaatcttgagcacaaagatgcag
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GCCATGGTAGCGGTATTTGCTACACACCGGTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctctcatttttcatctcctagcttttctttagttttttttttatatgtgaaaacatgtagtgccttcact---
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 3
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaag---aaatgactattggtaaatcttgagcacaaagatgcag
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GCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca---
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 3
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaa--atgactattggtaaatcttgagcacaaagatgcag
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GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgt-taatttctggctttttgcttctcctctaat----gttatttgagctttagcatagtaagtgactacagcattttgtttctatgaattacacag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187347|gb|CF606700.1|CF606700EST: TTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATG ATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGG
genomic: TTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgccccc ... ttgtgataagATGGAATTCTGCTTCTTGAGGTCAACAGGATGCTAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaaatgactattggtaaatcttgagcacaaagatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaga