Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGgtagatttgcttttttgtcatttcttctttcttctaatacaaagtttttattggagtatagtgacacctacacactgagatgatactataactcttaaactgttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g01020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 3
AGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGgtagatttgcttttttgtcatttcttctttcttctaatacaaagtttttattggagtatagtgacacctacacactgagatgatactataactcttaaactgttcag
|||||||||||||||||||||| || || ||| | || |||||||| ||||| ||||||         |||  |   ||   |  |   |||||  |   | |       | |  | ||||    ||    ||  |||  |  |||| ||             
AGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGTCATTCTTGACAAAGTGAAGgtaagagcatcgtttgattcattaagcaatg--ctaatttactttgtgagggtaacttaactgactaaaacttcttggaatgtaatgataaatcag-----------

upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGgtagatttgcttttttgtcatttctt---ctttcttctaatacaaagtttttattggagtata--gtgacacctacacactgagatgatactataactcttaaactgttcag
||||| ||||||| ||||||||||| || ||||| || || |||||||||||||||||    ||  |    |   | | | |    | |  |||  |  |  ||||  ||  |  | |   ||  |   |  | | ||  |     || |     ||  ||    |||
AGTATCGAACTGTGTCTGGTGTAGCCGGTCCACTTGTCATCCTTGAGAAAGTCAAGgttatatttttcacctaagaatccgtgtattgttgtctcttgtactgtttgaatctgtttttttcgtttcggttgta-attgcaacagctctgt---ctttgtacatgacag

upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 3
AGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGgtagatttgcttttttgtcatttcttctttcttctaatacaaagtttttattggagtatagtgacacctacacactgagatg-atactataactcttaa-actgttcag-----
||||| ||||||| || ||||||||||||||||| || ||||| ||||||||||||||    | | |    |   |     | |   ||    | |||   | || |     |      |    ||  |  || |  | | |||| ||  | |   | ||   |      
AGTATCGAACTGTATCCGGTGTAGCAGGGCCACTTGTCATTCTAGAGAAAGTCAAGgttagctagttcgcatcaaaggatgtatgcttttggtttcaatcatcttctctcgat----caatttgtattcgttgcggcggaaactaaaatccgtggcattggatatgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110706083|gb|EE083673.1|EE083673
EST:     GAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAAAAAGTCAAG                         GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACA
genomic: GAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGgtagatttgc ... aactgttcagGGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACG