1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAGgtttgcatattctccattctaccatttttgcagattcattcaaatatagaagaggatggtcttctatttacaatgcattactttattcttactcttggcattgttattaacagttttattaccctagtcatatttaaaacacttgacatctcttatttgcag
species | Vitis vinifera |
transcript | Vv18s0001g00950.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG GGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCATEST: gi|110375223|gb|EC940187.1|EC940187
genomic: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAGgtttgcatat ... ttatttgcagGGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCAT
EST: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG GGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCATEST: gi|161714742|gb|FC062685.1|FC062685
genomic: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAGgtttgcatat ... ttatttgcagGGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCAT
EST: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG GGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCAT
genomic: AAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAGgtttgcatat ... ttatttgcagGGTGCGTACCAGTTCTGGAATGTTTTTGAGGAGAGGGCGAGATAAAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAGgtttgcatattctccattctaccatttttgcagattcattcaaatatagaagaggatggtcttctatttacaatgcattactttattcttactcttggcattgttattaacagttttattaccctagtcatatttaaaacacttgacatctcttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG