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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagtttatttgatgttttgtattataacagaatgttcttgctattaaaagtaaaggttcatgcttacaggtatgaaataaatctatttacttagat...

Basic information

species Vitis vinifera
transcript Vv18s0001g00480.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769329|gb|FQ471478.1|FQ471478
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|71880141|gb|DT029196.1|DT029196
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352782455|gb|FQ470358.1|FQ470358
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|161714038|gb|FC064113.1|FC064113
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352765070|gb|FQ473718.1|FQ473718
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352773730|gb|FQ472512.1|FQ472512
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352777695|gb|FQ466748.1|FQ466748
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352781730|gb|FQ469028.1|FQ469028
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
EST: gi|352777783|gb|FQ466836.1|FQ466836
EST:     ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATG                         GCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA
genomic: ATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagttt ... tttgttatagGCGTCCTTTATTGGAGCAATGGCGATTGCTGACCTGGTTAAGACAACCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCCAGAATGgtgagagtttatttgatgttttgtattataacagaatgttcttgctattaaaagtaaaggttcatgcttacaggtatgaaataaatctatttacttagat

- - - - - - - - AAGATG
- - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa