1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGAGTTGCTCTATATATTGCTGAAGCATTAGATTATTGTAGTGCCGAAGGGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGgtattgtaacagaactcttatctcaagtttaagtatttatcatcttctattgtctacaagcactgacgtgagtttttcgcttacactttcattagggtga...
species | Vitis vinifera |
transcript | Vv18s0001g00180.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAG AATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGATEST: gi|161717682|gb|FC066283.1|FC066283
genomic: GGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGgtattgtaac ... gttttagcagAATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGAT
EST: GGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAG AATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAEST: gi|34543647|gb|CF511879.1|CF511879
genomic: GGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGgtattgtaac ... gttttagcagAATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATA
EST: TTCTCTTTGATGAG AATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGAT
genomic: TTCTCTTTGATGAGgtattgtaac ... gttttagcagAATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGTTGCTCTATATATTGCTGAAGCATTAGATTATTGTAGTGCCGAAGGGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGgtattgtaacagaactcttatctcaagtttaagtatttatcatcttctattgtctacaagcactgacgtgagtttttcgcttacactttcattagggtga
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