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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCTCGATTAAGAGCTGTTGTTTTGCATAGTCCAATACTCTCAGGCTTACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatacttgttttcaaatctatttgctgcttattactcatcatatctaaatagactttccatcatgttcttctcatctgaccataattttgcattgatattgtgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g09740.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
TTTGCCTCGATTAAGAGCTGTTGTTTTGCATAGTCCAATACTCTCAGGCTTACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatacttgttttcaaatc-tatttgctgcttattactcatcatatctaaatagactttccatcatgttcttctcatctgaccataattttgcattgat-attgtgcag
 |||| |||  |  |||||||||| ||||| ||||| ||||| ||||| ||  |||| |||||||||||||| |||||||| |||||||| || || |||||    ||    |||| |   | | ||   |     | |   || || |||    |  ||  || |     | ||  ||    ||  |   |  | ||  ||     | |||
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgttatccttttttattccatgttgatttagcttgatctattatttcttg-catgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: Vv17s0000g09740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
TTTGCCTCGATTAAGAGCTGTTGTTTTGCATAGTCCAATACTCTCAGGCTTACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatacttgttttcaaatc---tatttgctgcttattactcatcatatctaaat-agactttccatcatgttcttctcatctgac-cataattttgcattgatattgtgcag
|||  |||   |  ||||||||||  |||||||||| ||| | |||||  |  |||| |||||||||||||| || |||||||||||||| |||||||||||           | | || |     |||   |  | | |  ||  | | | ||  | ||       ||  | |  |  |||   |||    |||||||                
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtttgtcgtcatctgttaattgcggcattcaatattgagttatccgcttctatatctcaggtgcctgattttttgttattcaggcgacatgcaattttgt---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71888035|gb|DT037090.1|DT037090
EST:     TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAG                         AATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
genomic: TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatact ... tattgtgcagAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
EST: gi|110732441|gb|EE107729.1|EE107729
EST:     TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAG                         AATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
genomic: TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatact ... tattgtgcagAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
EST: gi|110711539|gb|EE088132.1|EE088132
EST:     TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAG                         AATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
genomic: TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatact ... tattgtgcagAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
EST: gi|110684904|gb|EE062715.1|EE062715
EST:     TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAG                         AATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
genomic: TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatact ... tattgtgcagAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
EST: gi|110701178|gb|EE078479.1|EE078479
EST:     TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAG                         AATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT
genomic: TACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGgtcaaatact ... tattgtgcagAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCAT